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Educative desktop application that it's main goal is develop any kind of mathematical operation in an easy and quick way. It's focus to users that don't have programming knowledge.
--UPDATE-- New Version is now integrated in the official PyMOL plugin repository! --UPDATE--
The BNI (Beyond Normal Interaction)- Tools is a plug in for the PyMOL molecular visualization system which adds additional functionalities and presets to the PyMOL GUI and also adds useful extended commands.
MAXIMUS is a genome assembly pipeline which takes the best out of multiple reference assemblies and de novo assembly. The benefits of this approach include better assembled repetitive regions, less gaps and higher accuracy for the resultant assembly.
Phylogenetic Representativeness is a method for estimating adequacy of taxon sampling for phylogenetic studies. Through a series of statistics generated by PhyRe, it is possible to evaluate taxon coverage within a given group.
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NOTE: We have moved the project to https://bitbucket.org/makokal/openprm/overview, all the code that is still in sf is not maintained anymore. please use the new code at the location given
This project is aimed at providing useful thermodynamic tools for biochemists, including formation energy estimation of virtually every biochemical compound and metabolic pathway analysis and profiling.
Pinkl is a library written to build flexible applications to control instruments connected to a computer using a GPIB or COM interface and take, store and plot measurements with these instruments.
MLboost: Machine Learning boost library in Python. MLboost main goal is to speedup any Machine Learning projects by simplifying data preprocessing, features selection and data visualisation. Design by Machine Learning practitioners to let them do ML...;)
Model Builder is a graphical tool for designing, simulating and analyzing Mathematical models consisting of a system of ordinary differential equations(ODEs).
qips is a software package for analyzing ChIP-seq ("Chromatin ImmunoPrecipitation on sequencing") data. It finds enriched regions of arbitrary lengths and is therefore especially suited for analyzing ChIP-seq of histone marks or polymerase.
ReliaFree is a Python and PyGTK based suite of tools to assist in Reliability, Availability, Maintainability, and Safety (RAMS) analyses. ReliaFree is intended to be an Open Source alternative to proprietary RAMS analyses solutions.
This toolkit allows complete control of a microscopy setup from Labview, Matlab, Scilab, Python, .Net, VB, IgorPro, Mathematica and more. Included is a standalone program for image acquisition and scripting control of a scientific microscope.
This project is for particle accelerator start-to-end simulation. The project contains software infrastructure for setting up model run as service/client mode.
pyComPic is a GUI (Graphical User Interface) for picprog, sdcc and gpasm written in Python. It uses pyGTK and GTK2 for the interface. It's a good choice if you want to avoid the command line. It works with all PIC programmers supported by picprog
Shift Word Helper is a scrabble-like games helper, which includes an online dictionary client. Shift Word Helper est un bon assistant pour les jeux de mots tels que le scrabble, avec un dictionnaire en-ligne integré. English & french supported
cgfreak is a control group visualization and manipulation tool written i Python and using PyGTK and PyCairo as backend. The idea is to help in understanding and clarifying how Linux control groups work.
This is a set of Python classes that can be used to simulate dynamic multi-body systems. It used to be a project for studies. Now it is not being worked on anymore, but it is completely GPLized.
SynBioLib -- your toolkit for synthetic biology applications. SynBioLib aims to establish a platform on which the Synthetic Biology community can develop and share code that is common to many tasks and programs.