Search Results for "microscope"
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Showing 50 open source projects for "microscope"
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1
Laravel Microscope
Fearless refactoring to find certain errors
Why repeat the old errors, if there are so many new errors to commit? Give your eyes a rest, we will detect and fix them for you. -
2
computem
Transmission Electron Microscope Image Simulation
These programs calculate high resolution conventional and scanning transmission electron microscope (CTEM, STEM) images of thin specimens from first principles using the multislice method for electrons in the energy range of approximately 60 keV to 1000 keV. The fundamental theory and usage are described in "Advanced Computing in Electron Microscopy" (Springer 2020) and Acta Cryst. A72 (2016) p. 1 by Earl J. Kirkland. Please refer to these for the theory of calculation and how to use these programs. ... -
3
ReViMS
ReViMS, a 3D volume rendering tool for light-sheet/confocal microscopy
...ReViMS requires a z-stack of 2D binary masks, obtained by segmenting a sequence of fluorescent images acquired by scanning the aggregate along the z axis, using a confocal or a light-sheet fluorescent microscope. It provides a number of tools for: (a) segmenting z-stacks of fluorescence images; (b) reconstructing the 3D surface of the aggregates and estimating several features (including the volume). ReViMS is written in MATLAB (The MathWorks, Inc., Massachusetts, USA). It is an open-source tool and the source code is freely available at: http://sourceforge.net/p/revims Requirements: MATLAB R2017b and Image Processing Toolbox 10.1 or later versions. -
4
AnaSP
AnaSP, a MATLAB software suite to ANAlyse SPheroids' features
...AnaSP is a suite tool for automatic analysis of morphological parameters of spheroids starting by brightfield images manually acquired with a standard widefield microscope. AnaSP is distributed as an open source software tool, and its modular architecture and graphical user interface make it attractive also for non-Computer Scientist people, and suitable for both high content screenings and occasional spheroid-based experiments. Please, when using AnaSP, cite: "F. Piccinini, AnaSP: a software suite for automatic image analysis of multicellular spheroids. ... -
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5
Scope
Software to run a two-photon microscope
Software to run a two-photon microscope -
6
PcartEndoscope
Video application to operate theese wifi cameras
...It is limited to displaying the image of the camera received from wifi. I coded it for my 'OZKAK' Endoscope. but I expect the following hardware to be compatible: THZY wifi endoscope bluefire wifi Endoscope ROTEK Microscope etc ... -
7
FUNseq
Cell segmentation/tracking for determing aggresive cancer phenotypes
...Also, such aberration identification is critical, as cells exhibiting these characteristics are linearly correlated with poor prognosis. A high-throughput screening microscope has been developed in our group to capture these sparse, abnormal cancer cells. A program to identify these cells of interest in an accurate and fast fashion is essential. For this, we developed the mTGMM program, which tracks cells of high-throughput images, and determines the aggresive phenotypes. -
8
ATR_Along The Root
Allow to measure the fluorescence around the root with a set diameter
Allow to measure the fluorescence around the root with a set diameter. For now, it is only supporting our lab microscope setup and file type. -
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The Artificial SEM Image Generator (ARTIMAGEN) is a library that generates artificial scanning electron microscope (SEM) and helium-ion microscope images of various samples, including gold-on-carbon resolution sample, or some semiconductor features.
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10
AcademiX
AcademiX GNU/Linux Education
...The AcademiX Linux distribution includes an installation utility that can be used to install a variety of applications in mathematics, physics, chemistry, geography, biology, statistics, electronics, amateur radio, graphics, office, programming – which are accompanied by virtual interactive labs, and a virtual microscope developed in collaboration with NASA. Robotics Laboratories successfully complete the list of educational programs provided by the distribution. Vote: https://distrowatch.com/table.php?distribution=academix -
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Feature: Detection host, lifting bracket, detachable design, easy to assemble and carry. The inspection host can replace the lens of the mat microscope, and it can be used as a mat microscope. Quickly locate the position of the small current leakage of the capacitor and lock the problem position. The software can only identify the algorithm and can display the temperature value of each chip. The software side quickly locks the problem chip by comparing and analyzing the normal/abnormal motherboard. ...
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12
Software_Manual_WBC_Differential_Counter
This is a software for counting blood cells with microscope.
This is a software program for counting blood cells with microscope, also known as differential counting. It is a medical software. The primary goal of this software is to imitate the function of 8 button WBC (White Blood Cell) differential counter. IMPORTANT!!! If your OS is Windows XP or Windows 7 you have to do mandatory setup. Please download mandatory setup.pdf from section FILES. Please check section FILES to download User Manual and 32 bit version of the program! -
13
White Blood Cell Differential Counter
Tally Cells as you view under microscope ⭐Please leave me a review
⭐Please leave me a review⭐ I live on feedback📬 This software allows staff to perform cell differentials using a keyboard. Simple $ useful! A new MSI installer has been created - an icon will appear on the desktop. ***************************************************************************** Don't be alarmed when installing the program. Windows will display an alert showing "unrecognized app", just click more info and then click run anyway to install WBC Diff counter. This warning... -
14
easy-dhpsf
GUI for fitting 3D single-molecule images using the double-helix PSF
This package of MATLAB routines with accompanying GUI allows scientific users to measure the 3D location of single molecules when using the double-helix point spread function (DH-PSF) widefield microscope. Version 2 also includes code that facilitates combining localization data from two spectral channels using a locally-weighted quadratic 3D registration function Features - Double-Gaussian estimator is calibrated via an axial scan of bright immobile fluorescent emitters (e.g. beads) - DH localization is performed through template matching and subsequent double Gaussian fitting - Tiff stacks of SM images are analyzed using template matching followed by double-Gaussian fitting to extract estimates of the molecule positions - Two spectral channels are registered by generating a locally-weighted quadratic mapping function from control point pairs -
15
LER&LWR Calculator
Tool for line edge parameters calculation
Load a folder with images from raster electron microscope, choose necessary options and let the algorythm calculate the characteristics of the line. -
16
F-Tracker3D
A software tool for tracking fluorescent cells in 3D
F-Tracker3D is acronym of "fluorescent cell tracker in three-dimensions". It is a software tool designed to track fluorescent cells using time-lapse z-stacks of images acquired with a confocal or light-sheet microscope. First, each single cell is tracked in 2D by using the maximum intensity projections of the z-stacks and CellTracker, the free open source software available at: www.celltracker.website. Then, the 3D track of each cell is obtained analysing the z-stacks and looking for the z-plane with the maximum intensity value for the different x-y positions previously determined. ... -
17
experix laboratory control system
instrument control, data acquisition display and analysis
...Interfaces accessible via commands and scripts: file i/o modelled on stdio and stdlib; usb control and bulk transfers; socket operations; webcam; graphics via framebuffer. Applications (not all available yet for download) include: cell poker (like an atomic force microscope); tissue mechanical tester; fluorescence photobleaching; alternating laser excitation fluorescence; fluorescence intensity distribution analysis; iverilog simulation analysis. -
18
pr0ntrace
Integrated circuit digitization
Collaborates converting microscope die images into original IC design files -
19
X-rays wave propagation
Simulation of X-rays wave propagation through lenses and air
The codes of subprograms in C, which simulate the X-rays wave propagation through berillium lenses and air. This program is necessary to calculate of X-rays wave focusing by X-ray microscope. The calculation is based on numerical solution of equation for a complex phase of the wave. -
20
SPIW - Scanning Probe Image Wizard
Scanning Probe Image Wizard - MATLAB Toolbox
SPIW is a MATLAB toolbox, for automated processing of scanning probe microscope images. Tools are applicable to all SPM images, but the main focus is on images with atomic or molecular resolution. SPIW is primarily a MATLAB toolbox with functions designed to be called in a user's own script. SPIW also has a very basic GUI for browsing and exporting images. For information on SPIW's performance see our publication ( http://dx.doi.org/10.1063/1.4827076 ) in the Review of Scientific Instruments. ... -
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ACCORD is a C library for composition of scanning electron or helium-ion microscope images with correction of drift. It produces significantly more accurate images than the traditional imaging techniques and also provides drift trajectories.
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Edu Ro
Edu * Ro is an operative system assembled under the Linux ..
...Dedicated applications for mathematics, physics, chemistry, geography, biology, statistics, electronics, graphics, office, music, audio and video editing, programming are rounded by a virtual Phet laboratory, a virtual microscope, robotics laboratory and various other online applications. One special section allows teachers to create different publications, both for the students convenience and further on-line publication. Some of the programms are assembled under the Debian Linux distribution, others are created and used by various renowned universities from US and Europa. ... -
23
NISMateServer
A python script to control NIS-Elements via a mobile device
...When the buttons or knobs are far away from the monitor, it will be difficult to do fast measurement just after changing a power or a switch. This project allows you to remotely control a Nikon microscope if it is connected to a PC running NIS-Elements. All you need is a smart device running Android, under the same WLAN environment as the PC does ... -
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Viewer for 3D data created with an Ultrasonic Microscope of PVA Tepla Analytical Systems. Uses Coin3D for visualisation.
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25
Toolchain for quantification of fluorescence intensity and morphological parameters in single cells using microscope based cytometry.
