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NanocalcFX is a free and open source evaluation software for a simple yet comfortable solution to deal with thousands of transport kinetics measured with a fluorescence microscope or similar kinetics.
Data can be imported from CSV or Excel files or using the dedicated image stack analyser (NISA).
You can get sample data at the nanocalcFX homepage.
Note that nanocalcFX is currently in a beta state.
A free virtual petrographic microscope application which allows users to examine and explore minerals and rocks features.
jVPM makes mineralogy to be easier to examine a thin section and to understand the characteristic properties for each mineral without a petrographic microscope, which is known to be very expensive. It is mainly addressed to students as a guide in individual or supervised laboratory work.
A tool for automating laser ablations for neuroscience
Ablator is a suite of software that automates the microscopic detection of cell targets and also directs a 2-photon microscope to lesion these targets in arbitrary patterns for neuroscience research. See Hayes et al 2012 for an example of its usage (http://www.pnas.org/content/109/21/8286.abstract).
A software tool enabling the user to browse through an image stack created by a confocal microscope. Points can be plotted through the stack, producing a digital 3D representation, which can be viewed in 3D and compared with other plots.
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The virtual lab is a NASA-funded project to provide simulated instrumentation. ITG has developed a Virtual Microscope (Virtual SEM and LM) for viewing high-resolution, multi-dimensional image datasets. More info and data: http://virtual.itg.uiuc.edu
Micro-manager is software that controls your microscope. It orchestrates digital cameras, shutters, filter wheels, stages and other motorized components to let scientists/engineers acquire images from the microworld the way they want.
Anatomy 3d simulator game in which microscope robot submarines navegate inside human body resolving health problems.
The idea behind this game is that the player can learn about medic/medicine, chemistry, anatomy and thers related topics.