Search Results for "using" - Page 32
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Showing 1951 open source projects for "using"
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PrivLocal/PrivGene
Differentially Private Model Fitting Using Genetic Algorithms
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Ballistica
Software Defined Scope System
This is an Open Source adaptation of the "Smart Rifle" or "Software Defined Scope System" (SDSS). Open source operating systems helped advance PC technology, making it available for everybody. Ballistica aims to be the "Linux of Smart Rifles": free and open source. The only challenge is the hardware, which must be fabricated by the user, or by any intrepid makers out there. -
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Redhat Linux Oracle OVM Systems Monitor
Redhat Linux OVM System Performance Monitoring
It's a very light Redhat Linux and Oracle OVM System Performance Monitoring tool written in Perl using rrdtool for Database and Graphing. Allows you to query the RRD database given a set of dates and generates a web based graphs. Easy to install. Uses less disk space than most performance monitoring tool. Data of each host monitored is kept for 2 years and occupy less that 25 MB of disk space. -
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DeCoAgent Library
Deliberative Coherence Driven Agent
This project is an extension to Jadex Framework and aims to develop an autonomous agent which is using adaptive decision making architecture based on Thagard’s deliberative coherence. -
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QPNet
Synchronous Petri Nets' emulator
QPNet (Quick Petri Net) is a fast Petri Nets' emulator, created by students of Moscow State Technical University of Radio Engineering, Electronics and Automation. It brings benefits for the educational process, while being under further development and extension. QPNet это быстрый эмулятор сетей Петри, созданный студентами МИРЭА. Он применяется в учебном процессе, а так же продолжает разрабатываться и эволюционировать. -
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deFuse is a software package for gene fusion discovery using RNA-Seq data. deFuse .tar.gz bundles will be released periodically on the sourceforge site, see Files. Questions can be posted to the sourceforge discussion forum. The sourceforge wiki is depracated in favour of documentation included with the package. Development of deFuse is on the bitbucket site, linked below.
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pmutualinformation
Computes pairwise genes mutual information using GEPs
pmutualinformation (parallel mutual information) computes the pairwise Mutual Information for all pairs of genes from a potentially massive and heterogeneous dataset containing GEPs. GEPs can be part of different experiments collected from public repositories. pmutualinformation runs on MIMD systems and has been implemented in C using the MPI standard. -
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...It uses approximate string matching technique and protein domain analysis to detect intact LTR retrotransposons. In addition, it identifies partially deleted or solo LTRs using profile Hidden Markov Models (pHMMs). MGEScan-non-LTR is a software for the identification of non-LTR retrotransposons in genomic sequences, following a computational approach inspired by a generalized hidden Markov model (GHMM). References: 1. M. Rho et al., "De novo identification of LTR retrotransposons in eukaryotic genomes", BMC Genomics (2007) 8:90. 2. ...
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EASEA (EAsy Specification of Evolutionary Algorithms: pronounce "easy") is a high-level language dedicated to the specification of evolutionary algorithms. EASEA up to version 0.7 compiles .ez specification files into C++ or JAVA object files.
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Protdraw
Create portable, flexible domain drawings of protein sequences
...Go to https://github.com/eserte/perl-tk and click the Download zip button. Run the unzip command, cd to the extracted directory and follow the directions in the 'INSTALL' file (using 'sudo' if necessary). ProtDraw creates flexible, easily-interpretable and portable illustrations of the domain structures of input sequences. ProtDraw is accompanied by makeProtDraw, a helper program which runs hmmer3 on a specified set of hidden Markov models and formats results for ProtDraw. Highest-scoring domains are selected in cases of overlap. ... -
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Gene Ontology Browser
Browser for viewing Gene Ontology (GO) .obo files.
Go Browser allows you to view a gene ontology on your local machine. You can go up and down the hierarchy and inspect the terms. It's a good way of familiarising yourself and orienting yourself in the GO system. It's built using the Baby X toolkit, so has no dependencies other than xlib. Baby X has now also been ported to Windows, so a Windows version is available. -
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WARNING: Project moved to http://github.com/scemama/irpf90 IRPF90 is a Fortran90 preprocessor written in Python for programming using the Implicit Reference to Parameters (IRP) method. It simplifies the development of large fortran codes in the field of scientific high performance computing.
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ExactCalc
Software for exact computing based on interval arithmetic.
...Sometimes is more easy to use numerical unstable algorithm to solve problem. Instability is actually speed of accumulating the truncation error, but it can be decreased arbitrary by using more precise computation. Interval arithmetic provides us control of accumulating truncating error. To save Your time using CPU time this program provides interpreter of simple programming language based on interval algebra with arbitrary precision arithmetic. -
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IsItQt (Qt)
Identifies if Linux program was created by Qt and version!
IsItQt is a Linux console application to identify if the program was created using Qt and in most cases, using which version of Qt was it created. Article about usage: http://www.cplusplus.com/articles/y3TbqMoL/ -
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libdwt
a cross-platform discrete wavelet transform library implemented in C
libdwt is a cross-platform discrete wavelet transform library implemented in C language. The library implements fast wavelet transform algorithm using lifting scheme. Cohen-Daubechies-Feauveau wavelets with 4 vanishing moments were used. -
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Arcadia is a light-weight, cross-platform, C++ desktop application designed for visualizing biological networks such as metabolic pathways.
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ADopenPOWERLINK
openPOWERLINK with Analog Devices ADSP-CM408F Mixed Signal Controller
ADopenPOWERLINK is an open source Ethernet Powerlink Controlled Node (Slave) solution using the Analog Devices ADSP-CM408F mixed signal processor (http://www.analog.com), along with Altera FPGA as network communication processor. The solution is based on openPOWERLINK provided by SYSTEC electronic (http://www.systec-electronic.com), B&R (http://www.br-automation.com) and Kalycito (http://www.kalycito.com). This release contains the necessary and required packages and documentation to setup the power-link controlled node using Analog Devices ADZS-CM408 EZLITE development board (http://www.analog.com/en/processors-dsp/cm4xx/adsp-cm408f/products/cm40x-ez/eb.html) as application processor, and a Terasic DE2-115 Altera FPGA development board as a communication processor. -
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XNDiff
X-ray and Neutron powder pattern simulation analysis
Keywords (XNDiff): -SAXS -SANS -absolute units -core (double)shell crystalline nanoparticles -with a parallelepidal shape -particle assemblies -powder and ensemble average -C/C++ -Unix -OpenMP -HPC Cluster Keywords (BatchMultiFit): -simultaneous fits for several SAXS and SANS curves with simulation data from XNDiff -SANS data can be smeared with dq values from experimental data sets or analytical functions -Mathematica console -local and global optimizers (simulated annealing, differential evolution, Nelder-Mead, ...) can be used -range for fit parameters and further constraints between fit parameters -parallelized (typ. 4-8 threads) TODO (BatchMultiFit): -read and use errorbars from experimental data sets -allow different q-ranges for different data sets in the fits -rewrite and test in Python using e.g. the lmfit module: https://pypi.python.org/pypi/lmfit/ to get rid of Mathematica and to run it on HPC clusters -
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resParser
Command line scientific calculator
resParser is a command line scientific calculator exploiting "50 digit precision" floating point computations using GMP and MPFR library. The project is open source with GLP v2 licence and cross platform. It is implemented with QT for GUI and for useful classes like QString. In the begin it was just a tool for computation of resistors values. Very similar to Speed Crunch as features Features: * Command line input * Built-in functions (log, exp, sin, cos, -
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Software for automated acquisition and analysis of paleomagnetic and rock magnetic data using the RAPID System.
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ViennaGrid is a generic mesh handling library that provides the traversal of structured and unstructured grids in arbitrary spatial dimensions, in particular 1d, 2d and 3d. Quantities can be conveniently stored on mesh elements using ViennaData.
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phcfM
R package for modelling anthropogenic deforestation
...It was named after the REDD+ pilot-project 'programme holistique de conservation des forêts à Madagascar'. phcfM includes two main functions: (i) demography(), to model the population growth with time in a hierarchical Bayesian framework using population census data and Gaussian linear mixed models and (ii) deforestation(), to model the deforestation process in a hierarchical Bayesian framework using land-cover change data and Binomial logistic regression models with variable time-intervals between land-cover observations. The two functions use embedded Gibbs samplers written in C++ with the Scythe statistical library to reduce computational time. -
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CAPE RNA
Classification based Analysis of Paired Expression data of RNA
CAPE RNA is package of command-line tools for integrated analysis of miRNA-mRNA expression data. miRNA-mRNA interaction states are assigned for each sample independent of a priori known experimental groups. Using these interaction classifications Jaccard-indexes are calculated to evaluate the quality of a predicted interaction based on the distribution of assigned interaction states compared to experimental groups. In addition, negative correlation between miRNA and mRNA expression can be analyzed. -
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Scientific data elaborator
The data elaborator is a new project to manage scientific data
This program can make histograms, table and graphics of datas, study the error propagation during a measure, it is usefull if you have to do study errors propagations. The output are latex files, so it is easy for you just put them into your relations.
