Search Results for "using" - Page 31
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Showing 1951 open source projects for "using"
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BiMS
BiMS (biclustering for mass spectrometry data) is a Java application d
...Users can load their MS datasets and apply different clustering and biclustering algorithms (current version includes Bimax and BiBit). In adition, users can load raw datasets (in mzML or mzXML formats) and preprocess them using MALDIquant package and MassSpecWavelet. -
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Advanced Numerical Instruments 2D
Advanced numerical instruments: adaptive meshing, FE methods, solvers
Ani2D provides portable libraries for each step in the numerical solution of systems of PDEs with variable tensorial coefficients: (1) unstructured adaptive mesh generation, (2) metric-based mesh adaptation, (3) finite element discretization and interpolation, (4) algebraic solvers. -
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Luscinia is a program for archiving and analyzing field sound recordings (especially of animals). It incorporates an interface to a database, spectrogram measurement algorithms, sound comparison algorithms, and statistical analysis.
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SIMBUCA (before called Simonion) is a simulation package that simulates the motion of charged particles under the influence of Electric and/or Magnetic fields. What makes Simbuca unique is that you can choose to calculate the Coulomb interaction between ions on a Graphics cards which is much faster than calculating this on the conventional CPU (reducing the simulation time from years to days). Therefore Simbuca has been applied in various projects which required to understand the...
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GUDM
A tool for pre-processing and fusing heterogeneous datasets
Global Unified Data Modeler (GUDM) is a bioinformatics software tool used for pre-processing and integrating multiple heterogeneous datasets, collected from multi-modal sources, into an integrated dataset. This integrated dataset is supposed to be used for different types of medical analysis and unified decisions, using different machine learning approaches. -
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miRNA Temporal Analyzer (mirnaTA)
Differential expression analysis tool for miRNAs in temporal studies
...The mirnaTA requires that users provide data from a minimum of two time points and analyze up to 20 time points. To normalize data and remove technical variability, Normal Quantile Transformation (NQT) was used, and the normalized data is analyzed using linear regression model to locate any miRNAs which are differentially expressed in a linear manner. Any miRNAs with P-value<0.05 are considered statistically significant. Remaining miRNAs which did not fit in linear model are further analyzed in two different methods: (1) if the number of time points <3, CDF of the normal distribution, and (2) if the number of time points is >= 3, ANOVA is utilized. ... -
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trafalgar.map
Open Street Map (OSM) tools, OSM/XML parser, tag extractor
...osm_cut: create rectangular extracts tr_view: view tool for trafalgar files, including fast osmtoolz import filter, GPX an KML track import (see screenshots) There is a small script included which helps to transform from *.bz2 to *.gz using a named pipe (seems not to work for cygwin) -
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NanoCap
Carbon Fullerene and Capped Nanotube Generator
NanoCap is a generic application for the construction of low energy fullerene and capped nanotube structures. It provides an ideal tool to accompany the study of finite carbon molecules using computer simulation. The implementation involves a standalone application which includes a GUI and allows for dynamic visual inspection through 3D rendering. In addition, the NanoCap core libraries can be used in custom Python scripts that enabled the user to produce structures in bulk or to include the structure generation routines into pre-existing code. -
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phpBathymetry
Using PHP-CLI to parse NMEA data to generate depth maps with GD
Using PHP-CLI to parse NMEA data to generate depth maps with GD. As fishing is a passion of mine,and it got me to consider using the NMEA formatted data output from my Lowrance 5-DSI Elite to generate a bathymetric map of the lake at my cottage. It is currently very crude, just a bunch of CLI scripts that record NMEA data, and the other parses the stored data and builds a depth, water temperature and sample frequency map. -
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Provides user level applications and supporting library for getting GPS assistance data (such as satellite ephemeris and almanac) from SUPL server using SUPL/RRLP protocol over TCP/IP.
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The Bio2RDF project aims to transforms silos of life science data into a globally distributed network of linked data for biological knowledge discovery. Bio2RDF creates and provides machine understandable descriptions of biological entities using the RDF/RDFS/OWL Semantic Web languages. Using both syntactic and semantic data integration techniques, Bio2RDF seamlessly integrates diverse biological data and enables powerful new SPARQL-based services across its globally distributed knowledge bases.
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Latest on Arxiv
Parse the latest Arxiv RSS stream and get your institute preprints
...I provide this software as a demonstration on how we do it at the Kapteyn Astronomical Institute. The script is run daily as a cron command. Feel free to take and modify this code any way you want. But if you are using it, I'd love to at least here from you and know I didn't put this up for nothing. The program has no major prerequisites, except the Python package pyPdf. It is build for Python 2.6.x series, but will probably work on many others as well. -
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Model Transformation Tools
Bond-graph based modelling tools
A set of tools for modelling dynamic physical systems using the bond-graph methodology and transforming these models into representations suitable for analysis, control and simulation. These tools use, and generate m files for, GNU Octave. -
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GEMPlot
GUI Program for GEMPAK
GUI Program for plotting Model & ReAnalysis Data using GEMPAK. Users can perform Model Analysis, Surface Analysis, Objective Analysis, Cross-Sectional Analysis, Isentropic Analysis, and ReAnalysis. Soundings can also be plotted for a selection of upper air stations within the CONUS. -
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...NOTE: The code is only accessible through the git repository in the "Code" section of this website. Please refer to the README file on how to get and install ROOTPWA and on how to contribute to the project. In case you are using ROOTPWA on a regular basis, please consider signing up for our low-traffic user's mailing list. In case you encounter problems using ROOTPWA, please use the bug-ticket system to get help.
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Agent.GUI
The Project moved to github https://github.com/EnFlexIT/AgentWorkbench
The project has moved to github https://github.com/EnFlexIT/AgentWorkbench Agent.GUI is a simulation framework and toolkit based on the JADE framework. It provides functionalities for time aspects, agent-environment interaction, visualization and load balancing, Furthermore, the included application focuses the usability for end users. -
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wiki export tool
A tool for exporting Wikipedia data
...To use this, you need prepare two things: Target dump of Wiki Target page name Then, configure the tool with dump path and input the page name, finally just let's it run, you will get the target page. Duration is dependent on size of the dump, and the number of pages. Take care for using option "talk, other talk...", this is now only for french corpora. -
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InfoSim
A Java Framework for Simulating Information Theory Concepts
This is a Java Framework which allows to design and simulate Channels, Cryptography algorithms, Coding algorithms, Noise analysis, Information sources and destinations, etc. It supports both Classical and Quantum Information Theory fields. It also allows to design a new Information Scheme from scratch. It has a big Math library which supports Abstract and Linear Algebra objects e.g Hilbert spaces. -
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virtualbelgium
parallelized micro-simulation of large population
The VirtualBelgium project aims at developing understanding of the evolution of the Belgian population using simulation and considers various aspects of this evolution (demographics, residential choice, activity patterns, mobility, ...). It is based on a validated synthetic population for the country and is intrinsically multi-disciplinary. -
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phenotemp
phenological trends using NOAA AVHRR time series
Starting from GIMMS values as ascii data (each line will be treated as individual time series), the application can smooth the ts - values by applying different algorithm that are based on Fouriertransformation. Separation of seasonal figure as well as the detection of linear trends is possible. Possible breaks in longterm mean can be detected with a change-point analysis using CuSum algorithms. Phenological events such as start-of-season, day-of-max/day-of-min, end-of-season can be determined via threshold-based algorithms or via analysis of max. increase of NDVI during green-up. These analyses work also for multimodal phenologies where individual seasons (partly) interfere each other. User can navigate through all steps of analysis via GUI or can define complex workflows that will be processed in batch-mode. -
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SuperpixelMethod
Implementation of phase and amplitude modulation methods for the DMD
...A description of the use of the software in digital holography can be found here: http://cops.nano-cops.com/publications/superpixel-based-spatial-amplitude-and-phase-modulation-using-digital-micromirror-devic This software was developed with support from ERC and FOM. -
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XNBC: neurobiology simulation tool
XNBC is a graphic application to simulate biologic neural networks.
XNBC is a full featured application for computer naive neuroscientists. It simulates biological neural networks using graphic tools to edit neurons and networks, to run the simulation and to analyze results. Written in C, it runs on Unix and Windows. Web site : http://ticemed-sa.upmc.fr/xnbc/ All recent versions are on this site. -
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Gamma Grapher Nano
Gamma Spectrometry using DSO 201 Nano hardware
This software to turn a DSO Nano 201 into a Multi-Channel Analyzer for gamma spectrometry. Software is open source. Support and discussion are through the GammaSpectrometry group at http://tech.groups.yahoo.com/group/GammaSpectrometry/ -
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