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Showing 266 open source projects for "include"
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Quan is designed to model physical quantities in C++ programs. Advantages include automated dimensional analysis checking, automatic unit conversions, self documentation of code.
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Earth Enterprise
Google Earth Enterprise - Open Source
Earth Enterprise is the open source version of Google Earth Enterprise (GEE), a powerful geospatial application suite that enables organizations to build and host custom 3D globes and 2D maps using their own imagery and data. Unlike Google Maps or Google Earth, Earth Enterprise does not include Google’s proprietary imagery but instead provides the tools needed to manage and visualize private geospatial datasets. The system is composed of three main components: Fusion, which processes and integrates imagery, vector, and terrain data into unified map layers; Server, which hosts the resulting globes or maps via Apache or Tornado-based web servers; and Client, which includes the Google Earth Enterprise Client (EC) for 3D visualization and the Google Maps JavaScript API V3 for 2D viewing. ... -
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Bridge.jl
A statistical toolbox for diffusion processes
Statistics and stochastic calculus for Markov processes in continuous time, include univariate and multivariate stochastic processes such as stochastic differential equations or diffusions (SDE's) or Levy processes. -
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Objectron
A dataset of short, object-centric video clips
The Objectron dataset is a collection of short, object-centric video clips, which are accompanied by AR session metadata that includes camera poses, sparse point-clouds and characterization of the planar surfaces in the surrounding environment. In each video, the camera moves around the object, capturing it from different angles. The data also contain manually annotated 3D bounding boxes for each object, which describe the object’s position, orientation, and dimensions. The dataset consists... -
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GenSeed-HMM
Progressive assembly tool using DNA, protein or profile HMMs as seeds.
...This program depends on BLAST+ or hmmsearch and a number of third-party support tools (EMBOSS' transeq and splitter, bowtie, 454's sfffile and sffinfo). Which tools will be mandatory depends on the kind of seed and assembler used. Assemblers currently supported include CAP3, Newbler, SOAPdenovo, Velvet, and Abyss. -
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The new version of MinimPy (MinimPy2) is available for download at: https://osdn.net/dl/minimpy2/MinimPy2.zip Please send your feedback about this new version to mahmood.saghaei@gmail.com (include MinimPy2 in the subject) ============================================================ MinimPy is a desktop application program for sequential allocation of subjects to treatment groups in clinical trials by using the method of minimization. Comprehensive reference help is available at http://minimpy.sourceforge.net MinimPy has been fully described in the following article: Saghaei, M. and Saghaei, S. (2011) Implementation of an open-source customizable minimization program for allocation of patients to parallel groups in clinical trials. ...
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eMatrix
A C++ Matrix Library
eMatrix is a lightweight matrix library developed in C++. EMatrix is designed to help solve engineering problems requiring linear algebra. eMatrix is OS independent and is fairly portable. New features include inv(A) and det(A). -
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Epidemic-Simulation
Simulate an epidemic like the Corona Pandemic and look at statistics
...Lockdowns, social isolation, being close to somebody who died and being sick makes unhappy. Being close to other (living) people makes happy (human relation). The satistics currently include number of: susceptible, infectious, recovered, deaths; total happiness and happiness of single persons. Acceptance of lockdowns depends on personality and decreases with time. -
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The TRANSIMS Studio application is an integrated development environment for the TRansportation ANalysis and SIMulation System (TRANSIMS). Components include a run time environment to execute TRANSIMS in parallel, as well as a full featured GUI.
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RegexToNFA
Compiles regular expressions into modular NFA
...This was originally an extended re-implementation of the "front-end" part in the following paper: https://www.computer.org/csdl/proceedings/reconfig/2008/3474/00/3474a073-abs.html It has since grown to include conversion of a set of NFAs to a DFA; compilation of NFAs to instruction suitable for simulation; and compilation of a DFA to hash-based data structures for a simulator. -
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weatherPi
An extensible weather sensor recording network, based on Raspberry Pis
A distributed network of sensors with a central data store, to record environmental data. Project goals include: * to serve as a teaching outlet for: ** sensor programming ** distributed data collecting ** web APIs ** database ** web UI for numerical data ** graphing data sensibly It also gives me some infotainment in new (to me) technologies, and as an excuse to scatter ever more Raspberry Pis around my home. -
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Meaning Explorer
A tool for analyzing the words of the Quran
The main purpose of this tool is to help users in extracting syntagmatic relations between words, lemmas and roots available in the Quran; these relations include identifying significant collocates and words’ co-occurrences. In addition, the tool also provides other helpful functionalities that complement the primary purpose, which include a Key Word In Context (KWIC) concordance, in addition to frequency lists of all words, lemmas and roots in the holy Quran. The main intended users of this tool are Arabic Quranic scholars and linguists. ... -
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Open Location Code
A library to generate short codes
...They are much shorter than traditional global coordinates, so they’re easy to share. Plus Codes work whether you’re online or offline, you don’t need an internet connection. Plus Codes are based on a set of 20 alphanumeric characters. They do not include easily confused characters, are not case-sensitive, and exclude vowels. Plus Codes represent an area. The resolution of the area can be changed by adding or removing characters after the “+” sign. Simple, free to use, open-source digital addressing, for the entire world. -
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rRNAFinder
Fast ribosomal RNA detector and annotator
..."rRNAFinder.pl" program included in the package uses nhmmer program searching against the arc.hmm, bac.hmm, and euk.hmm databases to identify rRNA genes from the input contigs. The predicated rRNA genes include 16S, 18S, 23S, 28S, 5S, and 5.8S rRNA genes. The "rna2taxon.pl" program accepts the above generated fasta format rRNA gene sequences as an input to produce the taxonomic assignments for the input genes. The input rRNA gene sequences are searched against the downloaded and reformatted SILVA SSU and LSU databases using blastn. ... -
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vrq is verilog parser that supports plugin tools to process verilog. Current plugins include tools to perform x-propagation and to auto build hiearchy.
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Pascalloid Calc
Hui or Pascal's Triangle into shaped Geometry, 3D
...Tools to play with the data are given. There is now a way to create user-defined algorithms. Dodecahedral and Icosahedral Pascalloids are now geometrically perfect and include no 'folding errors'. A 'data only' data output mode allows users to copy and paste the geometry data into any spreadsheet. Polarized (+/-) geometries for all shapes are included as an option, including special tools to work with both negative and positive numbers that appear in the revolving geometry display. A novel colorization system and graphic control system was employed, in order to visualize 3D or 4D Pascalloids. -
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Pikon-Stelarium interface
Pikon-Stelarium interface to use with azimuthal mount
This is a full project to make an software-drived azimuthal mount for the Pikon telescope, it can be use for others telescope. This project include : . Some other parts to print to adapt to the Pikon . Python code for raspberry Needed parts for "as it" use : . 1 Raspberry (model A suit well) . 3 motors steppers . 3 steppers drivers . 1 BNO055 (the one from adafruit was used) . 1 Pikon driver . 1 GPS module Sofware requirement : . raspbian . python 3 . some python libraries -
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ParamIT
a Toolset for Molecular Mechanical Force Field Parameterization
...The developed toolkit helps the researchers in following ways: 1) automating the creation of multiple input files for quantum and molecular mechanics programs, 2) automating the output analysis and 3) substitute the use of full MM programs with a faster specialized one. The developed tools include: 1) generator of molecule-water complexes with graphical user interface (GUI), 2) semi-automatic frequency analysis using symbolic potential energy distribution matrix and comparison of optimized internal coordinates, 3) GUI for charge fitting with three modes: manual, Monte-Carlo sampling or brute force, and 4) GUI for dihedral terms fitting. ... -
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Toxmatch
Exploring chemical similarity
Toxmatch is a flexible and user-friendly open-source software application that encodes several chemical similarity indices to facilitate the grouping of chemicals into categories and read-across. The core functionalities include the ability to compare datasets based on various structural and descriptor-based similarity indices as well as the means to calculate pair wise similarity between compounds or aggregated similarity of a compound to a set. -
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Xoptfoil
Airfoil optimization with Xfoil
Airfoil optimization using the highly-regarded Xfoil engine for aerodynamic calculations. Starting with a seed airfoil, Xoptfoil uses particle swarm, genetic algorithm and direct search methodologies to perturb the geometry and maximize performance. The user selects a number of operating points over which to optimize, desired constraints, and the optimizer does the rest. -
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The ChIP-Seq software provides methods for the analysis of ChIP-seq data and other types of mass genome annotation data. The most common analysis tasks include positional correlation analysis, peak detection, and genome partitioning into signal-rich and signal-depleted regions.
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RTC-simulator
Simulation and Control of Processing Plants
...A tutorial gives brief background to the theory and programming of each application, plus a stepwise set of objectives to illustrate the main features. The simulations include a number of the techniques described in Applied Process Control – Essential Methods, and that book’s accompanying volume, Applied Process Control – Efficient Problem Solving. Actually, RTC is not merely a suite of simulations: Each application can be switched from “MODEL” to “PLANT” mode for real-time control of equipment through a somewhat basic interfacing arrangement. ... -
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Finite Transform Library
A Library is for Finite Transforms
The Library is for Finite Transforms such as the Number Theoretic Transform (NTT) and Finite Radon Transform (FRT). Current modules include NTTW for NTTs with high resolution (microsecond) timing, basic array and imaging. The transforms are optimised for performance. -
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gvSIG CE (Community Edition)
The full-featured, easy-to-use desktop GIS with real processing power!
The Community Edition (gvSIG CE) is a fork of the gvSIG desktop GIS project (http://www.gvsig.org). It is open to external contributors and fully community-driven. Our official releases are designed to be portable and include all necessary binaries for Linux, Mac OS X and Windows. No installation necessary: Just download, unpack and run! -
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Meraculous-2D
Eukaryotic Genome Assembler
---------------------------------------- IMPORTANT: Meraculous-2D has been superseded by the HipMer assembler, available here: https://sourceforge.net/projects/hipmer/ ----------------------------------------- Meraculous-2D is a whole genome assembler for NGS reads (Illumina) that is capable of assembling large, diploid genomes with modest computational requirements. Features include: - Efficient k-mer counting and deBruijn graph traversal - Two modes of handling of diploid allelic variation - Improved scaffolding that produces more complete assemblies without compromising scaffolding accuracy. The assembly is driven by a perl pipeline which performs data fragmentation and load balancing, as well as submission and monitoring of multiple task arrays on a GE/SLURM-type cluster or a standalone multi-core server. ...
