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Open pharmacovigilance data extraction, mining and analysis tool
...OpenVigil 1 operates on raw data, OpenVigil 2 on cleaned data (using drugbank.ca and drugs@FDA), OpenVigilFDA uses the official FDA online API.
OpenVigil 2 supports query for ATC codes or certain chemical moieties.
Other tools of the OpenVigil project include a calculator for measurements of disproportionality for a 2x2 contingency table and a drugname mapper using RxNorm.
The new version of MinimPy (MinimPy2) is available for download at:
https://osdn.net/dl/minimpy2/MinimPy2.zip
Please send your feedback about this new version to mahmood.saghaei@gmail.com (include MinimPy2 in the subject)
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MinimPy is a desktop application program for sequential allocation of subjects to treatment groups in clinical trials by using the method of minimization. Comprehensive reference help is available at http://minimpy.sourceforge.net
MinimPy has been fully described in the following article:
Saghaei, M. and Saghaei, S. (2011) Implementation of an open-source customizable minimization program for allocation of patients to parallel groups in clinical trials. ...
An Eclipse RCP program for all aspects of a (Swiss) medical practice
An Eclipse RCP program for all aspects of a medical practice: electronic medical record (EMR), laboratory findings etc., as well as accounting, billing (swiss TARMED-System, other systems to be developped) and other daily work.
A fully functional version may be downloaded via http://download.elexis.info/3.1.0. Users may optionally include a demo database to have a playground for experiments. See also http://wiki.elexis.info/Installation_Elexis_3.0_OpenSource
Elexis 3.1.0 was released on May, 4 2017.
At http://elexis-forum.ch/ users have a place to share their experiences with other peoples.
Developers and anybody trying to compile Elexis from scratch should look at https://github.com/elexis/elexis-3-core/tree/master/ch.elexis.sdk
The documentation is found under http://wiki.elexis.info/
TMAJ is software for Tissue MicroArrays (TMA's). Patients, specimens, blocks, slides, cores, images, and scores can all be stored and viewed. Features include advanced security, custom dynamic fields, and an image analysis program.
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A Python function library to extract EEG feature from EEG time series in standard Python and numpy data structure. Features include classical spectral analysis, entropies, fractal dimensions, DFA, inter-channel synchrony and order, etc.
Java GUI to analyze one (or more, in batch mode) datasets with several feature selection methods at the same time and also performing an "ensemble" analysis. It can be easily extended to include any feature selection algorithm.
Comprehensive Meta Prediction and Annotation Services for Proteins: The new all-in-one prediction tool that can be easily extended to include any SOAP/WSDL-enabled prediction servers. A concise user interface lets you use the results instantly.
OpenEMed is a distributed healthcare and medical information framework based on open standards including those of HL7 and the healthcare taskforce of the OMG. These standards include identity management, observation access, access, and terminology.
BioCSharp is an open-source project designed to provide a bioinformatics .NET framework for processing biological data. It will include objects for manipulating sequences, file parsers, DAS, database access and analysis and statistical routines.
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The HealthQuilt project is a collection of Health Information tools released by the HealthQuilt team. This tools include CCR tools, as well as tools to improve the quality and coordination of healthcare.