Search Results for "immunohistochemistry image analysis"
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Showing 474 open source projects for "immunohistochemistry image analysis"
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Static Analysis Tools for PHP
Docker image that provides static analysis tools for PHP
Docker image providing static analysis tools for PHP. The list of available tools and the installer is actually managed in the jakzal/toolbox repository. Docker image with quality analysis tools for PHP. To run the selected tool inside the container, you'll need to mount the project directory on the container with -v "$(pwd):/project". Some tools like to write to the /tmp directory (like PHPStan, or Behat in some cases), therefore it's often useful to share it between docker runs, i.e. with -v "$(pwd)/tmp-phpqa:/tmp". ... -
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MatImage
Image Processing library for Matlab
matImage is an open-source MATLAB library for image processing and analysis. It provides a variety of tools for image enhancement, segmentation, and feature extraction. It’s especially useful for users working on biomedical images or those needing detailed image analysis in MATLAB. -
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Sherloq
An open source digital image forensic toolset
Sherloq is a research-oriented toolkit designed for digital image forensics, providing an integrated environment to experiment with algorithms for image analysis and tampering detection. Rather than functioning as an automated decision-making system, it serves as a companion tool for researchers, enthusiasts, and students who want to explore forensic techniques from scientific literature and workshops. -
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reverse-SynthID
Reverse engineering Gemini's SynthID detection
Reverse-SynthID is a research-focused project that analyzes and reverse-engineers Google’s SynthID watermarking system used in AI-generated images. It leverages signal processing and spectral analysis techniques to identify hidden watermark patterns without access to proprietary encoding methods. The project introduces a multi-resolution “SpectralCodebook” that maps watermark characteristics across different image sizes. Using this approach, it can detect SynthID watermarks with high accuracy and selectively reduce or remove them through frequency-domain manipulation. ... -
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SimpleITK
A layer built on top of the Insight Toolkit (ITK)
SimpleITK is an image analysis toolkit with a large number of components supporting general filtering operations, image segmentation and registration. It is built on top of the Insight Segmentation and Registration Toolkit ITK with the intent of providing a simplified interface to ITK. SimpleITK itself is written in C++ but is available for a large number of programming languages. -
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Large Language Models (LLMs)
Connect MATLAB to LLM APIs, including OpenAI® Chat Completions
This repository enables MATLAB to connect with large language models (LLMs) such as OpenAI's ChatGPT, DALL-E, Azure OpenAI, and Ollama, integrating their natural language processing and image generation capabilities directly within MATLAB environments. It facilitates creating chatbots, summarizing text, and image generation, among other tasks. -
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CompressO
Convert any video/image into a tiny size. 100% free & open-source
compressO is a cross-platform, open-source multimedia compression application designed to reduce the size of videos and images while preserving visual quality. Built using modern frameworks such as Rust and Tauri, it runs locally on the user’s machine, ensuring fast performance and complete privacy without requiring cloud processing. The application supports a variety of media formats and provides controls for adjusting compression levels, resolution, and output quality. In addition to... -
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fastdup
An unsupervised and free tool for image and video dataset analysis
fastdup is a powerful free tool designed to rapidly extract valuable insights from your image & video datasets. Assisting you to increase your dataset images & labels quality and reduce your data operations costs at an unparalleled scale. -
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EMBA
The firmware security analyzer
...EMBA is a command line tool with the possibility to generate an easy-to-use web report for further analysis. EMBA assists the penetration testers and product security teams in the identification of weak spots and vulnerabilities in the firmware image. EMBA provides as much information as possible about the firmware, that the tester can decide on focus areas and is responsible for verifying and interpreting the results. -
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dive
A tool for exploring each layer in a docker image
...This can be adjusted to show changes for a specific layer, or aggregated changes up to this layer. The lower left pane shows basic layer info and an experimental metric that will guess how much wasted space your image contains. This might be from duplicating files across layers, moving files across layers, or not fully removing files. Both a percentage "score" and total wasted file space is provided. You can build a Docker image and do an immediate analysis with one command: dive build -t some-tag . -
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Waifu2x-Extension-GUI
Video, Image and GIF upscale/enlarge(Super-Resolution)
Photo/Video/GIF enlargement and Video frame interpolation using machine learning. Waifu2x-Extension-GUI is a video, image and GIF upscale/enlarge(Super-Resolution) and Video frame interpolation. Achieved with Waifu2x, Real-ESRGAN, Real-CUGAN, RTX Video Super Resolution VSR, SRMD, RealSR, Anime4K, RIFE, IFRNet, CAIN, DAIN, and ACNet. The beta build has a faster update cycle than the stable build, which allows you to experience the latest features of the software in advance. Beta builds are... -
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video-compare
Split screen video comparison tool using FFmpeg and SDL2
...The tool supports videos with different formats, resolutions, and frame rates, making it versatile for testing encoding changes or processing effects. It includes interactive navigation controls and customizable display options to enhance analysis workflows. Users can visually compare codecs, scaling algorithms, and other transformations to evaluate quality differences. The application can also handle image sequences, extending its use beyond standard video files. Overall, it provides a powerful environment for visual quality assessment and debugging. -
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Scanopy
Clean network diagrams, One-time setup, zero upkeep
Scanopy is a powerful multi-modal data capture and analysis toolkit that enables users to collect, process, and visualize structured and unstructured information from a variety of sources in a flexible pipeline. It is built to handle complex scanning tasks — such as OCR, document analysis, audio transcription, network data capture, and image extraction — while providing unified APIs and workflows that make managing heterogeneous data sources seamless. -
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VoxelMorph
Unsupervised Learning for Image Registration
...Once the model has been trained, it can rapidly compute the transformation required to register new image pairs, significantly reducing computational time compared to classical registration algorithms. The framework supports both supervised and unsupervised learning approaches and is commonly used in medical imaging applications such as MRI alignment, anatomical analysis, and longitudinal studies. -
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Clair
Vulnerability Static Analysis for Containers
Clair is an application for parsing image contents and reporting vulnerabilities affecting the contents. This is done via static analysis and not at runtime. Clair v4 utilizes the ClairCore library as its engine for examining contents and reporting vulnerabilities. At a high level you can consider Clair a service wrapper to the functionality provided in the ClairCore library. -
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Blender GIS
Blender addons to make the bridge between Blender and geographic data
Import in Blender most commons GIS data format, Shapefile vector, raster image, geotiff DEM, OpenStreetMap XML. There are a lot of possibilities to create a 3D terrain from geographic data with BlenderGIS, check the Flowchart to have an overview. Display dynamics web maps inside Blender 3d view, requests for OpenStreetMap data (buildings, roads, etc.), get true elevation data from the NASA SRTM mission. Manage georeferencing information of a scene, compute a terrain mesh by Delaunay triangulation, drop objects on a terrain mesh, make terrain analysis using shader nodes, set up new cameras from geotagged photos, set up a camera to render with Blender a new georeferenced raster. -
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ML.NET
Open source and cross-platform machine learning framework for .NET
With ML.NET, you can create custom ML models using C# or F# without having to leave the .NET ecosystem. ML.NET lets you re-use all the knowledge, skills, code, and libraries you already have as a .NET developer so that you can easily integrate machine learning into your web, mobile, desktop, games, and IoT apps. ML.NET offers Model Builder (a simple UI tool) and ML.NET CLI to make it super easy to build custom ML Models. These tools use Automated ML (AutoML), a cutting edge technology that... -
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AtomAI
Deep and Machine Learning for Microscopy
AtomAI is a Pytorch-based package for deep and machine-learning analysis of microscopy data that doesn't require any advanced knowledge of Python or machine learning. The intended audience is domain scientists with a basic understanding of how to use NumPy and Matplotlib. It was developed by Maxim Ziatdinov at Oak Ridge National Lab. The purpose of the AtomAI is to provide an environment that bridges the instrument-specific libraries and general physical analysis by enabling the seamless deployment of machine learning algorithms including deep convolutional neural networks, invariant variational autoencoders, and decomposition/unmixing techniques for image and hyperspectral data analysis. ... -
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Obsidian Local GPT
Local Ollama and OpenAI-like GPT's assistance for maximum privacy
...It integrates deeply with Obsidian’s structure by pulling context from backlinks, linked notes, and even external files like PDFs to enhance responses. The system also supports multimodal capabilities, including image analysis when paired with compatible models. Users can create reusable prompts, install community-provided actions, and manage workflows directly inside their note-taking environment. -
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Docker Scout CLI
Docker Scout CLI
Designed to identify security issues, outdated packages, and potential compliance problems within container images, Docker Scout surfaces dependency vulnerabilities so you're protected. Docker Scout enhances your development process with detailed image analysis and proactive remediation tools. It integrates seamlessly with Docker Desktop and Docker Hub to improve your security and efficiency. Docker Scout’s local vulnerability analysis scans your images for potential security issues before they reach production. By detecting vulnerabilities early, it helps you ensure safer deployments and reduce the risk of security breaches in your applications. -
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ChatGPT Exporter
Export and Share your ChatGPT conversation history
...It integrates directly into the ChatGPT web environment, typically via tools like Tampermonkey, and adds export functionality without requiring backend services or complex setup. The tool supports a wide range of output formats including plain text, HTML, Markdown, JSON, and even image-based exports, making it suitable for documentation, knowledge management, and data analysis workflows. One of its key strengths is its ability to preserve formatting such as code blocks, tables, and structured responses, ensuring that exported content remains usable and readable. It also allows exporting entire conversations or selected portions, giving users flexibility depending on their needs. -
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PDF4QT
Open source PDF editor
PDF4QT is open source PDF editor based on Qt framework. It contains a C++ library, applications for viewing/editing PDF documents, and a command line tool. PDF4QT is an open-source PDF editor for Windows/Linux. It is a modern solution for viewing/editing/rendering PDF documents, for users and developers alike. For developers, there is a C++ library and a command line tool for use in scripts. For users, there are four applications offering many features. The project is hosted on Github and... -
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MolecularGraph.jl
Graph-based molecule modeling toolkit for cheminformatics
MolecularGraph.jl is a graph-based molecule modeling and chemoinformatics analysis toolkit fully implemented in Julia. -
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PipeCD
The One CD for All {applications, platforms, operations}
A GitOps style continuous delivery platform that provides consistent deployment and operations experience for any applications. Automatically trigger a new deployment when a defined event has occurred (e.g. container image pushed, helm chart published, etc). Support multiple application kinds on multi-cloud including Kubernetes, Terraform, Cloud Run, AWS Lambda, Amazon ECS. Support multiple analysis providers including Prometheus, Datadog, Stackdriver, and more. Easy to operate multi-cluster, multi-tenancy by separating control-plane and piped. -
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Code Climate CLI
Code Climate CLI
Align initiatives with strategic priorities, accelerate software delivery, and drive continuous improvement with the leading Engineering Intelligence Solution. Software development teams used to operate in the dark, forced to make decisions based on gut feel and anecdotes, causing friction, creating silos, and leading to mediocre outcomes. Today, forward-thinking engineering leaders leverage data-driven insights to build a culture of trust and high performance. Align on business priorities...
