Search Results for "immunohistochemistry image analysis"
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Showing 424 open source projects for "immunohistochemistry image analysis"
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Static Analysis Tools for PHP
Docker image that provides static analysis tools for PHP
Docker image providing static analysis tools for PHP. The list of available tools and the installer is actually managed in the jakzal/toolbox repository. Docker image with quality analysis tools for PHP. To run the selected tool inside the container, you'll need to mount the project directory on the container with -v "$(pwd):/project". Some tools like to write to the /tmp directory (like PHPStan, or Behat in some cases), therefore it's often useful to share it between docker runs, i.e. with -v... -
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Blender GIS
Blender addons to make the bridge between Blender and geographic data
Import in Blender most commons GIS data format, Shapefile vector, raster image, geotiff DEM, OpenStreetMap XML. There are a lot of possibilities to create a 3D terrain from geographic data with BlenderGIS, check the Flowchart to have an overview. Display dynamics web maps inside Blender 3d view, requests for OpenStreetMap data (buildings, roads, etc.), get true elevation data from the NASA SRTM mission. Manage georeferencing information of a scene, compute a terrain mesh by Delaunay... -
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PDF4QT
Open source PDF editor
... the license LGPLv3. The applications are primarily used by target users to view, edit, manipulate or compare PDF documents. Users can preview these applications in the screenshots section of this webpage. Basic browsing and lots of other functionalities, such as encryption, reading a document, verification of digital signatures, editing of annotations, searching for text using regular expressions, drawing pages into an image, and much more. Several plug-ins are available. -
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Waifu2x-Extension-GUI
Video, Image and GIF upscale/enlarge(Super-Resolution)
Photo/Video/GIF enlargement and Video frame interpolation using machine learning. Waifu2x-Extension-GUI is a video, image and GIF upscale/enlarge(Super-Resolution) and Video frame interpolation. Achieved with Waifu2x, Real-ESRGAN, Real-CUGAN, RTX Video Super Resolution VSR, SRMD, RealSR, Anime4K, RIFE, IFRNet, CAIN, DAIN, and ACNet. The beta build has a faster update cycle than the stable build, which allows you to experience the latest features of the software in advance. Beta builds are more... -
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Large Language Models (LLMs)
Connect MATLAB to LLM APIs, including OpenAI® Chat Completions
This repository enables MATLAB to connect with large language models (LLMs) such as OpenAI's ChatGPT, DALL-E, Azure OpenAI, and Ollama, integrating their natural language processing and image generation capabilities directly within MATLAB environments. It facilitates creating chatbots, summarizing text, and image generation, among other tasks. -
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DeepVariant
DeepVariant is an analysis pipeline that uses a deep neural networks
DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data. DeepVariant is a deep learning-based variant caller that takes aligned reads (in BAM or CRAM format), produces pileup image tensors from them, classifies each tensor using a convolutional neural network, and finally reports the results in a standard VCF or gVCF file. DeepTrio is a deep learning-based trio variant caller built on top of DeepVariant. DeepTrio... -
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GIXY
Nginx configuration static analyzer
... arguments with the help command: gixy --help. Gixy is available as a Docker image from the Docker hub. To use it, mount the configuration that you want to analyse as a volume and provide the path to the configuration file when running the Gixy image. If you have an image that already contains your nginx configuration, you can share the configuration with the Gixy container as a volume. -
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Clair
Vulnerability Static Analysis for Containers
Clair is an application for parsing image contents and reporting vulnerabilities affecting the contents. This is done via static analysis and not at runtime. Clair v4 utilizes the ClairCore library as its engine for examining contents and reporting vulnerabilities. At a high level you can consider Clair a service wrapper to the functionality provided in the ClairCore library. The main branch may be in an unstable or even broken state during development. Please use releases instead of the main... -
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whiteboxgui
An interactive GUI for WhiteboxTools in a Jupyter-based environment
The whiteboxgui Python package is a Jupyter frontend for WhiteboxTools, an advanced geospatial data analysis platform developed by Prof. John Lindsay (webpage; jblindsay) at the University of Guelph's Geomorphometry and Hydrogeomatics Research Group. WhiteboxTools can be used to perform common geographical information systems (GIS) analysis operations, such as cost-distance analysis, distance buffering, and raster reclassification. Remote sensing and image processing tasks include image... -
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iCn3D
Web-based protein structure viewer and analysis tool
"I see in 3D" (iCn3D) Structure Viewer is not only a web-based 3D viewer, but also a structure analysis tool interactively or in the batch mode using NodeJS scripts based on the npm package icn3d. iCn3D synchronizes the display of 3D structure, 2D interaction, and 1D sequences and annotations. Users' custom displays can be saved in a short URL or a PNG image. The complete package of iCn3D including Three.js and jQuery is in the directory "dist" after you get the source code with the "Code... -
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SageMaker Spark Container
Docker image used to run data processing workloads
Apache Spark™ is a unified analytics engine for large-scale data processing. It provides high-level APIs in Scala, Java, Python, and R, and an optimized engine that supports general computation graphs for data analysis. It also supports a rich set of higher-level tools including Spark SQL for SQL and DataFrames, MLlib for machine learning, GraphX for graph processing, and Structured Streaming for stream processing. The SageMaker Spark Container is a Docker image used to run batch data... -
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MetaGPT
The Multi-Agent Framework
The Multi-Agent Framework: Given one line Requirement, return PRD, Design, Tasks, Repo. Assign different roles to GPTs to form a collaborative software entity for complex tasks. MetaGPT takes a one-line requirement as input and outputs user stories / competitive analysis/requirements/data structures / APIs / documents, etc. Internally, MetaGPT includes product managers/architects/project managers/engineers. It provides the entire process of a software company along with carefully orchestrated... -
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Feishu ChatGPT
Voice dialogue, role-playing, multi-topic discussion, picture creation
Feishu × (GPT-3.5 + DALL·E + Whisper) = flying-like work experience. Voice dialogue, role-playing, multi-topic discussion, picture creation, table analysis, document export. Golang language, it goes without saying! Master the gin framework proficiently, developing the backend is as natural as breathing! Familiar with the SDKs of DingTalk, Feishu, Qiwei and other platforms, and be able to develop and integrate a series of amazing functions! Proficient in platform-based detail thinking, let... -
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Node.js Client For NLP Cloud
NLP Cloud serves high performance pre-trained or custom models
This is the Node.js client (with Typescript types) for the NLP Cloud API. NLP Cloud serves high-performance pre-trained or custom models for NER, sentiment analysis, classification, summarization, dialogue summarization, paraphrasing, intent classification, product description and ad generation, chatbot, grammar and spelling correction, keywords and keyphrases extraction, text generation, image generation, blog post generation, text generation, question answering, automatic speech recognition... -
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KOTS
KOTS provides the framework, tools and integrations
..., updates, image renaming, version controlling changes, and deployment) as well as additional KOTS tasks (running preflight checks and performing support bundle analysis). The install command is the recommended way to learn KOTS. Executing the install command will install an application and the kotsadm Admin Console to an existing Kubernetes cluster. This command supports installing Helm charts (without Tiller), standard Kubernetes applications and also Replicated KOTS apps. -
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SimpleITK
A layer built on top of the Insight Toolkit (ITK)
SimpleITK is an image analysis toolkit with a large number of components supporting general filtering operations, image segmentation and registration. It is built on top of the Insight Segmentation and Registration Toolkit ITK with the intent of providing a simplified interface to ITK. SimpleITK itself is written in C++ but is available for a large number of programming languages. Wrapping of the C++ code is accomplished through SWIG, in principle, any language wrapped by SWIG should... -
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The Scientific Image Analysis (SIA) software is an image processing application written in MATLAB for scientific analysis of images and video. SIA is designed to be intuitive and easy to use, and is free to download. While SIA is designed to meet the image processing needs of biologists, its functionalities can be used for a wide variety of applications. With SIA, users can calibrate and make single and continuous measurements of length, angle, area and the average color values within a region...
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dive
A tool for exploring each layer in a docker image
.... The lower left pane shows basic layer info and an experimental metric that will guess how much wasted space your image contains. This might be from duplicating files across layers, moving files across layers, or not fully removing files. Both a percentage "score" and total wasted file space is provided. You can build a Docker image and do an immediate analysis with one command: dive build -t some-tag . -
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fastdup
An unsupervised and free tool for image and video dataset analysis
fastdup is a powerful free tool designed to rapidly extract valuable insights from your image & video datasets. Assisting you to increase your dataset images & labels quality and reduce your data operations costs at an unparalleled scale. -
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Coca
Coca is a toolbox which is design for legacy system refactoring
Coca is a toolbox that is design for legacy system refactoring and analysis, including call graph, concept analysis, api tree, and design patterns suggestions. Requirements: graphviz for dot file to image (such as svg, png). The easiest way to get coca is to use one of the pre-built release binaries which are available for OSX, Linux, and Windows on the release page. -
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EMBA
The firmware security analyzer
.... EMBA is a command line tool with the possibility to generate an easy-to-use web report for further analysis. EMBA assists the penetration testers and product security teams in the identification of weak spots and vulnerabilities in the firmware image. EMBA provides as much information as possible about the firmware, that the tester can decide on focus areas and is responsible for verifying and interpreting the results. -
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ML.NET
Open source and cross-platform machine learning framework for .NET
... that automates the process of building best performing models for your Machine Learning scenario. All you have to do is load your data, and AutoML takes care of the rest of the model building process. ML.NET has been designed as an extensible platform so that you can consume other popular ML frameworks (TensorFlow, ONNX, Infer.NET, and more) and have access to even more machine learning scenarios, like image classification, object detection, and more. -
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Docker Scout CLI
Docker Scout CLI
Designed to identify security issues, outdated packages, and potential compliance problems within container images, Docker Scout surfaces dependency vulnerabilities so you're protected. Docker Scout enhances your development process with detailed image analysis and proactive remediation tools. It integrates seamlessly with Docker Desktop and Docker Hub to improve your security and efficiency. Docker Scout’s local vulnerability analysis scans your images for potential security issues before... -
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PipeCD
The One CD for All {applications, platforms, operations}
A GitOps style continuous delivery platform that provides consistent deployment and operations experience for any applications. Automatically trigger a new deployment when a defined event has occurred (e.g. container image pushed, helm chart published, etc). Support multiple application kinds on multi-cloud including Kubernetes, Terraform, Cloud Run, AWS Lambda, Amazon ECS. Support multiple analysis providers including Prometheus, Datadog, Stackdriver, and more. Easy to operate multi-cluster... -
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MolecularGraph.jl
Graph-based molecule modeling toolkit for cheminformatics
MolecularGraph.jl is a graph-based molecule modeling and chemoinformatics analysis toolkit fully implemented in Julia.