Search Results for "error" - Page 3
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Showing 118 open source projects for "error"
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LiDSiM
LImits of Detection SImulation for Microbes
LiDSiM is a tool to estimate the possible influence of error-tolerant database searches and proteogenomic approaches on the amount of unidentified spectra and the ratios of taxonomic relationship of identified spectra in MS/MS studies of microbial proteomes. For more details about LiDSiM and its functioning, please see "Estimating the Computational Limits of Detection of Microbial Non-Model Organisms" Mathias Kuhring and Bernhard Y. -
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iAstroHub
Automated astrophotography using mobile devices
iAstroHub is: - the world's first solution for mobile astrophotography. A user can interact with all astrophotography devices from any mobile device using a web browser. - developed by Anat Ruangrassamee, Ph.D., Bangkok Thailand. (aruangra at yahoo dot com) See how it works from here: http://www.youtube.com/watch?v=Sncd3j8ipBQ Requirements and supported devices. 1. Autoguider: Orion Starshoot autoguider, QHY5, QHY5-II, QHY5L-II, QHY6 2. DSLR 3. CCD: QHY5,6,8,8L,9,11,12 4.... -
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MethylExtract
High-Quality methylation maps and SNV calling from BS-Seq experiments
MethylExtract is a user friendly tool to generate i) high quality, whole genome methylation maps and ii) to detect sequence variation within the same sample preparation. The program is implemented into a single script and takes into account all major error sources: sequencing errors, bisulfite failure, clonal reads and single nucleotide variants. MethylExtract detects variation (SNVs – Single Nucleotide Variation) in a similar way than VarScan, a very sensitive method extensively used in SNP and genotype calling based on non-bisulfite treated reads. -
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kagwang
A wireshark dissector plugin for the IEEE 1905.1 protocol.
The IEEE 1905.1 standard describes a convergent digital home network for heterogeneous technologies, such as PLC, WLAN, Ethernet and MoCA. This dissector enables Wireshark to understand, display and analyze IEEE 1905.1 traffic. It is implemented as a LUA script and can thus be easily plugged-into an existing wireshark installation. See the comments at the beginning of the file for hints on how to install the plugin. -
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SIMBUCA (before called Simonion) is a simulation package that simulates the motion of charged particles under the influence of Electric and/or Magnetic fields. What makes Simbuca unique is that you can choose to calculate the Coulomb interaction between ions on a Graphics cards which is much faster than calculating this on the conventional CPU (reducing the simulation time from years to days). Therefore Simbuca has been applied in various projects which required to understand the...
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leave-kojack
Leave-k-out-Jackknife Pearson correlation
In general, Pearson correlation coefficients can be quite error-prone to outliers, thus Jackknifing may be helpful. I could not find any useful implementation for calculating more than leave-1-out Jackknife Pearson correlation coefficients. 'leave-kojack' offers an implementation for Jackknife Pearson correlation with dynamic values of k, i.e. leave-k-out Pearson correlation. -
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Athus
Manage, merge, filter and convert population genetics data
This project assists you in performing population genetic analyses by taking over the ugly, boring and error-prone data manipulation steps. Starting from well specified input formats VCF, BED and FASTA and a unique configuration file describing data (f.e. from SNP-arrays or sequencing) as well as filtering one can create standard POPGEN formats like Eigenstrat, PEDMAP (PLINK), Treemix ... In addition there are several utilities for * generating VCF from SNPArray data (NCBI - GEO, Illumina call files) * work with genetic maps ... -
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ExactCalc
Software for exact computing based on interval arithmetic.
...Sometimes is more easy to use numerical unstable algorithm to solve problem. Instability is actually speed of accumulating the truncation error, but it can be decreased arbitrary by using more precise computation. Interval arithmetic provides us control of accumulating truncating error. To save Your time using CPU time this program provides interpreter of simple programming language based on interval algebra with arbitrary precision arithmetic. -
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JBernstein
JBernstein: Exploration techniques for non-linear constraint checking
...Concerning performance, the tool enables to check all examples in the PVS Bernstein testsuite within a second, which can be an order of magnitude faster than some other tools such as QEPCAD or REDLOG. Although JBernstein uses double, it offers automatic error-estimation capabilities (experimental) so that the generated result is correct (the solver may return unknown when the error-estimate is too large) -
Enterprise-grade ITSM, for every businessFreshservice is an intuitive, AI-powered platform that helps IT, operations, and business teams deliver exceptional service without the usual complexity. Automate repetitive tasks, resolve issues faster, and provide seamless support across the organization. From managing incidents and assets to driving smarter decisions, Freshservice makes it easy to stay efficient and scale with confidence.
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Scientific data elaborator
The data elaborator is a new project to manage scientific data
This program can make histograms, table and graphics of datas, study the error propagation during a measure, it is usefull if you have to do study errors propagations. The output are latex files, so it is easy for you just put them into your relations. -
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An integrated set of functions that automate many navigational and tidal calculations which can be time consuming and error prone if performed manually. It can be linked to a GPS to automatically receive position fixes and other information.
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Open PECTool
Open PECTool - manipulate peroidic error data for Celestron mounts.
This is clone of the Celestron PECTool used to upload, download and manipulate PEC data. It is intended to work with Celestron Nexstar mounts like NexStar GPS, NexStar GPS-SA, NexStar iSeries, NexStar SE Series, NexStar GT, Advanced-VX, Advanced-GT and CGE mounts. Communication to the hand control is 9600 bits/sec, no parity and one stop bit via the RS-232 port on the base of the hand control. To build it libnexstar version 0.11 or newer is needed, which can be found here:... -
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Fast Gauss-Legendre Quadrature Rules
Computes Gauss-Legendre quadrature nodes and weights
...The key features are: - Speed: due to the simplified formulas and the O(1) complexity computation of individual Gauss-Legendre quadrature nodes and weights. The latter also makes this software perfectly compatible with parallel computing paradigms. - Accuracy: the error on the nodes and weights is smaller than a few ulps (see the paper for details). -
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Botnet Detectors Comparer
Compares botnet detection methods
Compares botnet detection methods by computing the error metrics by reading the labels on a NetFlow file. The original NetFlow should have a new column for the ground-truth label, and a new column with the prediction label for each botnet detection method. This program computes all the error metrics (TPR, TNR, FPR, FNR, Precision, Accuracy, ErrorRate, FMeasure1, FMeasure2, FMeasure0.5) and output the comparison results. -
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q pipeline manager
q: integrated platform for pipeline configuration and management
...Data processing pipelines require high-level organization and parallelization of work to optimize resource utilization and decrease the time to results. q (from queue) allows complex job sequences to be efficiently assembled and managed, including dependency tracking, parallelization, and pipeline-level monitoring, error recovery, and data protection. Pipelines are constructed from modular script files, with job definitions and results stored in easily retrieved job files. A web interface facilitates job submission and monitoring, with the complete pipeline exportable for full transparency. -
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Error-corrector for pyrosequenced amplicon reads.
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Musket - short read error corrector
a parallel short-read error corrector for Illumina sequencing
...Our performance evaluation results, in terms of correction quality and de novo genome assembly measures, reveal that Musket is consistently one of the top performing substitution-error-based correctors. In addition, Musket is multi-threaded using a master-slave model and demonstrates superior parallel scalability compared to all other evaluated correctors as well as a highly competitive overall execution time. -
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libcerf
Complex error functions, Dawson, Faddeeva, and Voigt function
A self-contained C library providing complex error functions, based on Faddeeva's plasma dispersion function w(z). Also provides Dawson's integral and Voigt's convolution of a Gaussian and a Lorentzian. -
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fit2dcorr
SAXS 2D > 1D data reduction software, wrapper for Fit2D
...The old version is kept at sourceforge. Keywords: fit2d SAXS azimuthal averaging batch processing absolute units (exposure time, transmission, sample thickness) error bars C++ Unix OpenMP -
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abc-sde
approximate Bayesian computation for stochastic differential equations
...It performs approximate Bayesian computation for stochastic models having latent dynamics defined by stochastic differential equations (SDEs) and not limited to the "state-space" modelling framework. Both one- and multi-dimensional SDE systems are supported and partially observed systems are easily accommodated. Variance components for the "measurement error" affecting the data/observations can be estimated. A 50-pages Reference Manual is provided with two case-studies implemented and discussed. The methodology is based on the research article available at http://arxiv.org/abs/1204.5459 Author's research page is http://www.maths.lth.se/matstat/staff/umberto/ -
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NOTE: This project was moved to: https://github.com/eetorres The BPANNA is a flexible Back propagation neural network, which include the Conjugate Gradient and the Levenberg-Marquardt. You can change the number of inputs, number of layers, number of neurons per layer and outputs. It included an structure editor.
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hrefinder
Detection of homologous recombination events from SNP data
...We use information from the nearby SNPs, so that if 1-2 alleles in a series of SNPs differs from the ancestral allele, it may be better explained as a mutation or sequencing error. But if a series of SNP alleles differ from the ancestral pattern, then it may be more likely that an HRE has occurred, particularly if the allele pattern matches that from another part of the tree better than that of the ancestral node. -
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ErrorCalculator
a scientific calculator with error propagation
A scientific calculator with the possibility to propagate errors. -
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ARDEN
Specificity Control for Read Alignments Using an Artificial Reference
We introduce ARDEN (Artificial Reference Driven Estimation of false positives in NGS data), a novel benchmark that estimates error rates based on real experimental reads and an additionally generated artificial reference genome. It allows the computation of error rates specifically for a dataset and the construction of a ROC-curve. Thereby, it can be used to optimize parameters for read mappers, to select read mappers for a specific problem or also to filter alignments based on quality estimation. -
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rnasimulase
Simulation of allele-specific RNA-seq data
Simulation of allele-specific RNA-seq data
