Showing 14870 open source projects for "linux-debian"

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  • 1
    FragGeneScan
    FragGeneScan is an application for finding (fragmented) genes in short reads. It can also be applied to predict prokaryotic genes in incomplete assemblies or complete genomes. FragGeneScan was first released through omics website (http://omics.informatics.indiana.edu/FragGeneScan/) in March 2010, where you can find its old releases. FragGeneScan migrated to SourceForge in October, 2013.
    Downloads: 4 This Week
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  • 2
    APBSmem is a Java-based graphical user interface for Poisson-Boltzmann electrostatics calculations at the membrane. APBS version 1.2.0 or later is required.
    Downloads: 4 This Week
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  • 3

    APTTools

    A collection of utilities for atom probe tomography analysis

    A collection of command-line tools for atom probe analysis including: * Point data XML scripting language, load, transform, resize and otherwise alter point data * Radial Distribution Function analysis tools * Level-set tools for simulating shape transformations during experiments
    Downloads: 4 This Week
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  • 4
    a R package. 'Qair' gives access to data bases used by air quality monitoring associations in France. It also contains functions to manipualte air quality datas.
    Downloads: 5 This Week
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  • 5

    epics-sequencer-HZB

    The EPICS SNL Compiler and Sequencer

    The Sequencer implements a language for programming state machines with the EPICS framework. EPICS is developed collaboratively and used worldwide to create distributed soft real-time control systems for large scale scientific instruments. SNL borrows most contructs from the C programing language and adds some new statements for defining states and conditions for transitions between states.
    Downloads: 4 This Week
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  • 6

    ERmod

    Approximate solvation free energy calculator

    ERmod (Energy Representation Module) is a program to calculate the solvation free energy based on the energy representation method (J. Chem. Phys. 113, 6070 (2000)). The program allows users to calculate the solvation free energy to arbitrary solvents, including inhomogeneous systems, and can run in cooperation with state-of-art molecular simulation software, such as LAMMPS, GROMACS and/or AMBER.
    Downloads: 4 This Week
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  • 7
    Computational electromagnetics software. Uses surface Method of Moments, enhanced by using the Multilevel Fast Multipole Method. Code is parallelized and runs on laptops, desktops and clusters. The code precision is adjustable, it is fast and uses little memory. CFIE is used for closed surfaces, and EFIE for open PEC surfaces. Can function on GMSH, GiD and ANSYS meshes.
    Downloads: 4 This Week
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  • 8

    Graph Plotter

    GP is a tool to analyse numerical data

    GP is aimed to be simple and fast tool to analyse numerical data. It does not claim to replace all other plotters.
    Downloads: 4 This Week
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  • 9
    GeomSS
    GeomSS is a geometry modeling and scripting system in Java. Write scripts that create and analyze complex geometry including NURBS curves and surfaces. This is especially useful for tasks that must be repeated with small or parametric variations.
    Downloads: 4 This Week
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  • 10
    CFDTool - CFD & OpenFOAM GUI Toolbox

    CFDTool - CFD & OpenFOAM GUI Toolbox

    CFDTool - Easy to Use Computational Fluid Dynamics (CFD) Toolbox

    CFDTool - "CFD Simulation Made Easy" CFDTool is a fluid dynamics toolbox for modeling and simulation of flows with coupled heat transfer. Based on FEATool Multiphysics (https://www.featool.com), CFDTool is specifically designed to make advanced fluid mechanics and heat transfer simulations both easy and enjoyable. - Completely stand-alone and cross-platform self-contained toolbox - Optionally use as MATLAB Add-On toolbox - Fully integrated and easy to use MATLAB GUI - Modeling and...
    Downloads: 5 This Week
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  • 11
    AudeLA
    AudeLA is a TCL extension aimed at providing amateur astronomers with image processing, telescope controling, ccd camera driving, and various astronomical algorithms. Web site : https://sourceforge.net/p/audela/wiki/fr_accueil Web site : https://sourceforge.net/p/audela/wiki/en_welcome
    Downloads: 3 This Week
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  • 12
    metaf2xml

    metaf2xml

    Parse and decode METAR, TAF, SYNOP, BUOY, AMDAR and write data as XML

    metaf2xml can download, parse and decode aviation routine weather reports (METAR, SPECI, SAO), aerodrome forecasts (TAF), synoptic observations (SYNOP), observations from buoys (BUOY) and meteorological reports from aircrafts (AMDAR). Data can also be taken from decoded BUFR messages. The extracted data can be written as XML or passed to a user-defined function (all done in Perl). It also provides XSLT style sheets to convert the XML to plain language (text, HTML), or XML with different...
    Downloads: 5 This Week
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  • 13
    Statistics101 - Resampling Statistics

    Statistics101 - Resampling Statistics

    Use simulation to perform statistical analyses.

    Statistics101 is an Integrated Development Environment (IDE) that uses a simple, powerful language called “Resampling Stats” to develop Monte Carlo programs to analyze and solve statistical problems. The original Resampling Stats language and computer program were developed by Dr. Julian Simon (https://www.juliansimon.com/) and Peter Bruce (https://www.scientificamerican.com/author/peter-bruce/) as a new way to teach Statistics to social science students. Of course, social science students...
    Downloads: 6 This Week
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  • 14
    Calculator-Scripts

    Calculator-Scripts

    Just a few scripts for pocket calculators.

    Just a few applications for various pocket calculators.
    Downloads: 3 This Week
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  • 15
    NGSEP

    NGSEP

    NGSEP (Next Generation Sequencing Experience Platform)

    NGSEP is an integrated framework for analysis of short and long DNA high throughput sequencing reads. The current version provides functionalities for both de-novo and reference guided analysis of sequencing data, including genome assembly, read mapping, variants detection and genotyping and de-novo analysis of data generated from reduced representation protocols. NGSEP also provides modules for analysis of genomic variation databases (VCF files), including functional annotation, filtering,...
    Downloads: 5 This Week
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  • 16
    QroCAD

    QroCAD

    Beginner-friendly CAD software available for both web and desktop.

    QroCAD is a beginner-friendly CAD software available for both web and desktop.
    Downloads: 2 This Week
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  • 17
    mzMatch is a Java collection of small commandline tools specific for metabolomics MS data analysis. The tools are built on top of the PeakML core library, providing mass spectrometry specific functionality and access to the PeakML file format.
    Downloads: 4 This Week
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  • 18
    DEVS-Suite Simulator

    DEVS-Suite Simulator

    Component, CA, and CCA models; superdense time, DB repo, testing, etc.

    Integrated component-based and cellular automata (CA) Parallel DEVS simulator: https://acims.asu.edu/devs-suite/ OFFERS: 1) synchronized execution & animation, 2) run-time linear/superdense I/O & state trajectories, 3) Action Level Real-Time modeling & simulation, 4) model checking, 5) ABM, 6) CA & composable CA playback, 7) KIB interaction modeling, 8) hierarchical model libraries, 9) Black-Box testing & debugging, 10) PostgreSQL repository, 11) FMU (OpenModelica), 12) OSATE (AADL)...
    Downloads: 6 This Week
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  • 19
    Zgoubi is a raytracing code. Since 1972 it pushes charged particles through accelerators and beam lines, by stepwise solution of Lorentz force equation - and their spins via Thomas-BMT differential equation. Zgoubi simulates beam dynamics and polarization in a variety of accelerators (storage ring, synchrotron, cyclotron, betatron, microtron, FFAG, multi-pass ERL, etc) and optical systems (beam lines, magnetic and electrostatic optical components, time-of-flight and mass...
    Downloads: 5 This Week
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  • 20
    KlipperOS

    KlipperOS

    Live USB containing a OS with everything you need for a klipper laptop

    Welcome to the KlipperOS Live USB! I created this to simplify Klipper setup and avoid having to purchase a pi. Before you begin, please read all of the README on the GitHub at github.com/MaxR-712/klipperOS.
    Downloads: 3 This Week
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  • 21
    Alignment Solver

    Alignment Solver

    Solve Alignment of Road , Rail,Tunnel

    ...The project is under Heavy development. Please report any issues to the ticket system. Tested Operating Systems Windows 7 / 8 / 10/ 11 64 bit Ubuntu 16.04 / 22.04 64 bit Deepin 15 64 bit Linux Mint 18.2 64 bit MXlinux 21
    Downloads: 3 This Week
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  • 22
    RefDB is a reference database and bibliography tool for SGML, XML, and LaTeX documents, sort of a Reference Manager or BibTeX for markup languages. It is portable and known to run on Linux, Free/NetBSD, OSX, Solaris, and Windows/Cygwin.
    Downloads: 3 This Week
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  • 23
    FitBio

    FitBio

    Application for analysing Take-Out files, e.g. from FitBit SmartWatch.

    This application takes a so-called "Take-Out" ZIP file that has been downloaded from a SmartWatch and allows to analyse the health and other recorded data it contains. It allows to plot several data items and export specific data into CSV files for further use, e.g. with spreadsheet tools like Excel. It has been validated to work with Google and FitBit SmartWatches but will also work with similar data tracker archives.
    Downloads: 3 This Week
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  • 24

    json-scada

    A portable SCADA/IoT platform centered on the MongoDB database server.

    Standard IT tools applied to SCADA/IoT (MongoDB, PostgreSQL/TimescaleDB,Node.js, C#, Golang, Grafana, etc.). MongoDB as the real-time core database, persistence layer, config store, SOE historian. Portability and interoperability over Linux, Windows, x86/64, ARM. Horizontal scalability, from a single computer to big clusters (MongoDB-sharding), Bare Metal, Docker containers, VM, cloud, or hybrid deployments. Unlimited tags, servers, and users. HTML5 Web interface. UTF-8/I18N. Protocols: IEC61850 Client, IEC60870-5-101/104 Client and Server, DNP3 Client, OPC-UA Client/Server, MQTT/Sparkplug-B, Telegraf (various data sources for monitoring like Modbus, SNMP, etc.) ...
    Downloads: 4 This Week
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  • 25
    ShelXle

    ShelXle

    ShelXle is a Qt GUI for SHELXL

    ShelXle combines an editor with syntax highlighting for the SHELXL-associated .ins (input) and .res (output) files with an interactive graphical display for visualization of a three-dimensional structure including the electron density (Fo) and difference density (Fo-Fc) maps. See J. Appl. Cryst. (2011). 44, 1281–1284. for details.
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    Downloads: 3 This Week
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