Showing 64 open source projects for "program work"

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  • 1
    VCF Explorer

    VCF Explorer

    A desktop application for analyzing whole genome VCF files

    ...The paradigm shift from exome to whole genome brings a significant increase in the size of output files. Most of the existing tools which are developed to analyze exome files are not adequate for large VCF files produced by whole genome studies. In this work we present VCF-Explorer, a variant analysis software capable of handling large files. Efficient memory management of the program and the elimination of preliminary parsing step enable to carry out the analysis at ordinary computers. VCF-Explorer presents an easy to use environment where various types of queries for the annotation and the samples can be defined. ...
    Downloads: 2 This Week
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  • 2

    REDO

    REDO - RNA Editing Detection in Organelle

    REDO is a comprehensive application tool for identifying RNA editing events in organelles based on variant call results (VCF files). It is a suite of Perl scripts and can work easily and directly in any operating system installed Perl and R Environment. The stringent rule depended filters and statistical filters are used in REDO for reducing false positive rate. It can provide detailed annotations, statistics and figures for RNA editing sites. REDO also can detect RNA editing events in...
    Downloads: 0 This Week
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  • 3
    orbkit (Moved to Github)

    orbkit (Moved to Github)

    A Modular Python Toolbox for Cross-Platform Post-Processing of Quantum

    ...If you use orbkit in your work, please cite it as follows: Gunter Hermann, Vincent Pohl, Jean Christophe Tremblay, Beate Paulus, Hans-Christian Hege, and Axel Schild, "ORBKIT: A Modular Python Toolbox for Cross-Platform Postprocessing of Quantum Chemical Wavefunction Data", J. Comput. Chem. 2016, DOI: 10.1002/jcc.24358. orbkit's documentation can be found at http://orbkit.github.io/
    Downloads: 0 This Week
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  • 4

    UNSW Metadata Stores (ResData)

    An institutional research metadata management repository.

    ...It integrates with institutional enterprise systems, such as HR and Grant management systems to facilitate re-use of existing information, such as People and Project records. ResData has been developed by the Library Repository Services, University of New South Wales. The work was supported by the Australian National Data Service (ANDS) under its MS21 program. ANDS is supported by the Australian Government through the National Collaborative Research Infrastructure Strategy Program and the Education Investment Fund (EIF) Super Science Initiative.
    Downloads: 0 This Week
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  • Atera all-in-one platform IT management software with AI agents Icon
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  • 5
    Text Expander, Inverse summarizer

    Text Expander, Inverse summarizer

    Expand text, inverse summarizer

    IT WILL WORK WITH A JAVA DEVELOPMENT KIT 1.7 ONLY !!! This program is a data-miner and a knowledge-miner. It does exactly the opposite of what the text summarizers do. A text summarizer produces a shortened text given some text as an input. An inverse summarizer takes the shortened input, a similar or a same text and does the process in reverse.
    Downloads: 0 This Week
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  • 6
    mapgraph

    mapgraph

    Massively Parallel Graph processing on GPUs -- now part of Blazegraph

    ...The early work was released under the Apache 2 open source license and is available on here at Sourceforge. This work was (partially) funded by the DARPA XDATA program under AFRL Contract #FA8750-13-C-0002 and DARPA Contract #D14PC00029.
    Downloads: 0 This Week
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  • 7
    ArabicDiacritizer

    ArabicDiacritizer

    An automatic restoration of Arabic diacritic marks

    ...The algorithm is described in detail in: Ilyes Rebai, and Yassine BenAyed 'Text-to-speech synthesis system with Arabic diacritic recognition system', Computer Speech & Language, 2015. We appreciate it very much if you can cite our related work. ************** Installation *************** - Extract the archive "ArabicDiacritizer Setup.rar". - Install the application using "Setup.exe". - Put an Arabic text in the Text Box. - Start the diacritization process. If the following problem occured: <Access to the path '..\ArabicDiacritizer v1.0\text.data' is denied> - Access to the path "Program Files\ArabicDiacritizer\ArabicDiacritizer v1.0\", - Right click on "ArabicDiacritizer" - Choose "Run as administrator" For further information, please contact: rebai_ily
    Downloads: 0 This Week
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  • 8

    Latest on Arxiv

    Parse the latest Arxiv RSS stream and get your institute preprints

    ...Feel free to take and modify this code any way you want. But if you are using it, I'd love to at least here from you and know I didn't put this up for nothing. The program has no major prerequisites, except the Python package pyPdf. It is build for Python 2.6.x series, but will probably work on many others as well.
    Downloads: 0 This Week
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  • 9

    Protdraw

    Create portable, flexible domain drawings of protein sequences

    ...ProtDraw is accompanied by makeProtDraw, a helper program which runs hmmer3 on a specified set of hidden Markov models and formats results for ProtDraw. Highest-scoring domains are selected in cases of overlap. Domain drawings may be organized by sequence classification.
    Downloads: 0 This Week
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  • Lightspeed golf course management software Icon
    Lightspeed golf course management software

    Lightspeed Golf is all-in-one golf course management software to help courses simplify operations, drive revenue and deliver amazing golf experiences.

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  • 10
    A modified version of XFLR5 (http://www.xflr5.com/xflr5.htm/) that focuses on analyzing a folder of airfoils to find the best airfoil for a given Re distribution Currently this project is very task-specific and may require a large amount of work to adapt it to other uses. It still has lots of bugs is definitely in its infancy. However, updates are planned for the future. Current Bugs of note: - The program doesn't currently close correctly. To close it you must use the task manager and end Qfils.exe
    Downloads: 0 This Week
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  • 11
    PCBColorizer

    PCBColorizer

    Automatic coloring PCB - make a color circuit board for installation.

    The program is designed for automatic coloring schemes of printed circuit boards for ease of installation. For its work requires some files with information on the printed circuit board, package generated by P-CAD. The basic principle: each type of component (identical components) are marked with a unique symbol that has its own color and style.
    Downloads: 0 This Week
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  • 12
    Aciqra

    Aciqra

    A virtual planetarium for observers of the real sky.

    ...The program is platform-independent and can be made to work on most modern computers that support OpenGL.
    Downloads: 9 This Week
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  • 13
    Clover

    Clover

    a simple lab information management system (LIMS)

    ...Please rate, like, share, and tweet, if you like this program!
    Downloads: 3 This Week
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  • 14

    qcasoft

    Qualitative Comparative Analysis with Fuzzy Data in JAVA

    This software allows qualitative comparative analysis with fuzzy data. The program is based on the work of C.C. Ragin. For more information, see the following articles: * Ragin, C. C., 1987, The Comparative Method. Moving beyond qualitative and quantitative strategies, Berkeley/Los Angeles/London: Univ. of California Press. * Ragin, C. C., 2000, Fuzzy-Set Social Science, Chicago/London: University of Chicago Press
    Downloads: 0 This Week
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  • 15
    LAVA for AFM

    LAVA for AFM

    Lloyd's Algorithm-based Volumetric Analysis for AFM Images

    ...Although developed for determining feature volume, LAVA is also completely compatible with other types of image analysis, such as fluorescence intensity. Work is in progress to provide three-channel functionality, allowing comparison of relative intensity of red, green, and blue channels in multi-color images.
    Downloads: 2 This Week
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  • 16

    Planets

    A program for approximate simulation of planetary systems

    With Planets you can create and simulate planetary systems on your computer using Newton's law of universal gravitation. This program can be used in schools for illustration and students can experiment with it themselves. I created this project as part of the German Abitur exam, which is why the help documents are currently only available in German. Requirements: - Python 2.7 - Windows 7, Windows XP, Ubuntu Other operating systems may work but were not tested.
    Downloads: 0 This Week
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  • 17

    Virtual Sound Level Meter

    Virtual Sound Level Meter for analyzing calibrated sound files

    ...Source code requires MATLAB + Signal Processing Toolbox. Developed under MATLAB R2010a (but might work with some earlier versions) Executable version does not require MATLAB and runs under Windows XP, Vista, and Windows 7.
    Downloads: 11 This Week
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  • 18

    ArduinoPulseGenerator

    Generate pulse trains using an Arduino

    ArduinoPulseGenerator is a simple program for generating pulse sequences using an Arduino. There is an associated GUI that runs on the local computer, or you can simply connect to the Arduino with a serial console (9600 baud) and send it commands. This code has been tested on the ArduinoMega 2560 (timing accuracy ~ ±200 μs) and Arduino Due (timing accuracy ~ ±35 μs); it may work on other Arduino boards but this has not been tested.
    Downloads: 0 This Week
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  • 19

    SILENT

    a Scratch Interface for Lego NXT

    SILENT is a Scratch modification that interfaces with LEGO MINDSTORM NXT 2.0 robot. It's based on Scratch 1.4.2, developed in JAVA, Squeak and Bash scripting. It's supported by Linux and Windows XP/7, in which it was tested. It required JAVA>=6. Easy to setup and easy to learn! Please leave your review to help me to improve it!
    Downloads: 0 This Week
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  • 20

    ResistPy

    Geophysical Modelling with R2/R3

    ResistPy is a Python program designed to work with R2 & R3t for processing, modelling & visualization of electrical resistivity data. ResistPy reads a variety of raw data formats and helps the user prepare the data for modelling with R2 or R3.
    Downloads: 1 This Week
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  • 21

    Hanoi in Basic

    The Famous Recursive Algorithm In Old-Fashioned BASIC

    This program is written in BWBasic, the version provided with DOSEMU, the DOS emulator. In this version of BASIC, you use GOSUB to call a procedure, and there are no local variables. So I used arrays to allocate memory for stacks, from where the "local variables" are taken. From this code you can learn how recursion and functions with dynamic local variables work.
    Downloads: 0 This Week
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  • 22

    Pysimony

    A Pythonic Implementation of Parsimony Inference of Phylogeny

    UPDATE: After some bug fixes, I've ditched Pysimony for Javamony: https://sourceforge.net/projects/javamony/ Given Python's beauty, I know that someday I will have to finish Pysimony. A student's first attempt at a phylogenetic inference program, written in the simplistic yet elegant Python. Pysimony reads a FASTA file (only ATGC accepted) specified as its only argument. Basic testing has shown that it is slow, inaccurate and most definitely inefficient. An unlikely-to-be-the-most-parsimonious tree is printed upon completion in basic Newick tree format. As all parts of the program are the original work of a beginner programmer, this may represent one of the worst approaches to solving the phylogenetic problem. ...
    Downloads: 0 This Week
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  • 23
    Console based notepad number cruncher makes calculations fast and simple, yet with ample features under the hood. With log turned on, you can record your session on-the-fly from any open instance of the program.
    Downloads: 0 This Week
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  • 24

    Noisy Channel Simulator

    Demonstrate errors in transmission of a file over a noisy channel.

    This program was written to dimonstrate errors in transmission for a presentation on Claude Shannon's Noisy Channel Coding Theorem. It takes an input file, the probability of a bit being flipped, and, if specified, the size of the header of the file. The program was intended to take monochrome bitmap files as input, so that each bit refers to a pixel in the image and thus, it would be easy to see errors in the output file, as some of the pixels would be flipped; however, it will work on any input file.
    Downloads: 0 This Week
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  • 25
    This is a multi-threaded Java program that tries to maximise CPU utilization by separating and distributing the computational part of the work from the file reading and writing part by using separate threads.
    Downloads: 0 This Week
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