Showing 118 open source projects for "error"

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  • 1
    ...MIRA - Sequence assembler and sequence mapping for whole genome shotgun and EST / RNASeq sequencing data. Can use Sanger, 454, Illumina and IonTorrent data. PacBio: CCS and error corrected data usable, uncorrected not yet.
    Downloads: 5 This Week
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  • 2
    Numerics for Chemical Engineering

    Numerics for Chemical Engineering

    Numerical models for chemical and process engineering

    NCE Calculation Framework is a library of routines, models and data applicable to chemical and process engineering calculations, written in Java. -- NEW -- www.chesolver.com *ONLINE CALCULATORS*. A set of solvers to perform calculations consistently on any device, from smart-phone to desktop. The project includes the following ready to use software all based on the same core library: * Online Calculators at www.chesolver.com * Extensions for Libreoffice/Openoffice Calc...
    Downloads: 3 This Week
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  • 3

    OpenRTDynamics

    A framework for implementing real-time control systems

    ...Besides, this framework properly handles multiple threads, their communication, allows to synchronise control systems to external events (e.g. variable timers or incoming network packages) and provides many other nice features. Because of a high-level schematic-description language -- in form of provided Scilab commands -- only a minimal implementation-effort (no error-prone C-programming) is required.
    Downloads: 0 This Week
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  • 4

    NNmapper

    Perform short reads mapping

    ...NNmapper can map a query read (1) to the library read that gives the smallest distance (most similar), (2) to the library read that gives the smallest distance while the distance is smaller than a threshold, or (3) all library reads that have distances smaller than threshold. NNmapper has high error-tolerant and is suitable for any read lengths. NN reports all mapping locations for multi-reads. MATLAB installation required. Mac or Linux system required.
    Downloads: 0 This Week
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  • 5
    vision2

    vision2

    Binocular vision examination using shutter glasses

    Vision2 serves as tool for ophthalmologists and other vision testing professionals. It's useful for a variety of ophthalmology testing applications related to stereo vision. It implements many of classical tests but also new types of vectographic and random dot exams. Program was created as part of diploma thesis in Wroclaw University of Technology in Poland.
    Downloads: 0 This Week
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  • 6
    UnityConverter

    UnityConverter

    Simple software to convert many kinds of unity.

    Unity Converter is the software, which have really good tools to convert many kinds of unity, it helps people whose works with physics too much, and also people who are engineer.
    Downloads: 0 This Week
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  • 7
    MicroModelicaVirtualNodes
    Virtual Nodes Parallelization for MicroModelica models. This tool performs Virtual Nodes Parallelization on a given MicroModelica model for being simulated in QSS Solver. The objective is to reduce the error introduced by simulating large-scaled models in parallel on QSS Solver simulating tool. This is done through redundant computations on certain state variables of the model. These redundant computations are called Virtual Nodes.
    Downloads: 0 This Week
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  • 8

    fNBookForm2 for Mathematica

    print sci num with powers (txtbook) + read back

    ...Easy, quality, comprehensive. booknum reads such. an important aspect is that the result maintains both accuracy and precision and has rounding control. doing this sometimees requires careful planning (error-prone complicated conversions). can read them back from textbook (into Mathematica) preservingly (for historic reasons files were also in https://sourceforge.net/projects/periodictablemm/)
    Downloads: 4 This Week
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  • 9
    ICE (Interval Calculator for Engineer)

    ICE (Interval Calculator for Engineer)

    Interval Calculator for Engineer

    ICE is a simple mathematical calculator with very useful shortcuts for Engineer: works natively with tolerance, can run Monte Carlo analysis, uses engineer notation, includes most of the day by day functions used by engineers.
    Downloads: 0 This Week
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  • 10

    erf

    error function and related functions in pure standard Fortran 2008

    Fortran 2008 added 3 new intrinsic functions: erf, erfc, erfc_scaled. However, they take only real arguments. This package provides a BSD licensed Fortran 2008 module with erf(z), where z is a complex argument. The calculation is based on calculating w(z), the Faddeyeva (plasma dispersion) function. Two algorithms are implemented: TOMS 680 and 916, http://www.netlib.org/toms/. The simple test program calculates values in the Abramowitz, Stegun.
    Downloads: 2 This Week
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  • 11

    MuffinEC

    Multi-technology, INDEL aware error correction for NGS data

    MuffinEC is an error correction software capable of handling all types of errors (insertion deletions, mismatches and unknown bases). It officially supports four technologies (Illumina, 454, ion Torrent and PacBio - experimental) and it also has a generic setup for others (old and/or new). It is released under LGPL version 3.0. MuffinEC can use multicore systems, thanks to its OpenMP implementation.
    Downloads: 0 This Week
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  • 12

    EV3Utils

    LEGO EV3 Utilities and Assembler

    ...Communication with the brick is currently limited to USB-only, but other transports should be easy to add. The assembler supports all of the functionality of the one provided by LEGO, but uses a slightly different syntax and supports far more error checking. Not endorsed by LEGO, and they probably don't even know it exists.
    Downloads: 0 This Week
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  • 13
    ***** Discontinued (direct part of NetLogo now (since NL v6)!) ***** This extension connects the simulation platform NetLogo with the statistical analysis software R. It adds some new primitives to NetLogo, which offers the interchange of data with R and the call of R functions from NetLogo. See the documentation for more details. There is also the possiblity to open an Interactive R Shell from NetLogo. _______________________________________ Please have also a look on our info...
    Downloads: 0 This Week
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  • 14

    Trowel - Sequencing Error Corrector

    Error Correction Module for Illumina Sequencing Reads

    Trowel is an error correction module for Illumina sequencing reads, which is based on the k-mer spectrum approach. This tool is the first tool that uses a quality threshold instead of a coverage cutoff in order to extract trusted k-mers. This tool guarantees high accuracy and speed. This tool has been developed since 21. Jan. 2013 by Euncheon Lim in Prof.
    Downloads: 0 This Week
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  • 15
    Genome Mappability Score Analyzer
    The Genome Mappability Analysis suite is used for measuring how well NGS reads can be mapped to reference genomes, especially for discovering variations
    Downloads: 0 This Week
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  • 16
    ChIP-RNA-seqPRO

    ChIP-RNA-seqPRO

    ChIP-RNA-sequencing-processing (ChIP-RNA-seqPRO)

    ChIP-RNA-seqPRO: A strategy for identifying regions of epigenetic deregulation associated with aberrant transcript splicing and RNA-editing sites. Runnable python scripts packaged together with customized annotation libraries, demo data input and README guide. 9/26 : v1.1 Updated MAIN_IV to debug error thrown by python pandas no longer supporting 'subset'. This code will no longer be actively maintained/updated here. A cloud-based resource for comparative analysis of epigenetic, sequence variation, and expression datasets is now available. Please visit the Cloudomics, project for cloud-based resources: https://sourceforge.net/projects/cloudomics-for-aws/
    Downloads: 0 This Week
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  • 17
    ...Perform evaluation on alignment quality reals that CUSHAW3 consistently outperforms CUSHAW2, BWA-MEM, Bowtie2 and GEM in terms of single-end and paired-end alignment. Furthermore, our aligner has demonstrated better paired-end alignment performance than Novalign3 for short-reads with high error rates.
    Downloads: 0 This Week
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  • 18
    Virastyar

    Virastyar

    Virastyar is an spell checker for low-resource languages

    Virastyar is a free and open-source (FOSS) spell checker. It stands upon the shoulders of many free/libre/open-source (FLOSS) libraries developed for processing low-resource languages, especially Persian and RTL languages Publications: Kashefi, O., Nasri, M., & Kanani, K. (2010). Towards Automatic Persian Spell Checking. SCICT. Kashefi, O., Sharifi, M., & Minaie, B. (2013). A novel string distance metric for ranking Persian respelling suggestions. Natural Language Engineering,...
    Downloads: 74 This Week
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  • 19

    MDA

    Molecular Dynamics Analyzer (MDA)

    MDA is a 3D single-particle tracking software that explicitly addresses fluorescence microscopy experiments deep in living specimens. It is capable of minimizing the systematic error that occurs with astigmatism-based 3D techniques owing to the aberrations induced by the refractive index mismatch. In contrast to existing techniques, the method determines the aberration directly from the acquired 2D image stream by exploiting the inherent particle movement and the redundancy introduced by the astigmatism. It does not require additional experimental effort for the user and imaging can directly be started once interesting regions in the sample have been identified. ...
    Downloads: 0 This Week
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  • 20

    BLESS: NGS Error Correction Tool

    Bloom-filter-based Error Correction Tool for NGS reads

    Downloads: 1 This Week
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  • 21

    Virus QSP Modeling

    C++ and Python code for simulating RNA virus replication

    Stochastic simulation model of poliovirus Sabin-to-Mahoney genetic state transition (C++ code). Models genotypes, virus populations, and quasispecies cloud. Simulates replication error and copy-choice recombination. Various parameters guiding the model are user-specified. Python code post-processes simulation output to produce report files.
    Downloads: 1 This Week
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  • 22
    LightProfiler

    LightProfiler

    Profiler for Oracle extended SQL trace files

    ...It generates detailed resource profile for extended SQL trace files (10046 event), containing information about consuming of response time (by events, by cursors, etc.), data files usage, error analysis (SQL, PL/SQL) and much more. Also it contain tools for additional processing of trace files (extract session data, splitting files) and for management of database's sessions (disconnecting, tracing, monitor parameters, blocking locks, events and etc.)
    Downloads: 0 This Week
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  • 23

    IsoSearcher

    Sistema de visualización de isosuperficies en imágenes médicas 3D

    ...Implementa algoritmos que permiten realizar mallas no-estructuradas, de las isosuperficies, compuestas de elementos triangulares; con una densidad uniforme elegida por el usuario, de acuerdo a su criterio y la cota de error admisible para las aproximaciones del cálculo numérico. Permite visualizar isosuperficies variables y utilizar un plano de corte y dos isosuperficies fijas como guía para el recorte de la estructura de interés. Además provee herramientas para guardar y cargar mallas almacenadas en el disco duro.
    Downloads: 0 This Week
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  • 24

    FASTQSim

    NGS data characterization and in silico read generation

    ...FASTQSim is sequencing platform-independent, and computes distributions of read length, quality scores, indel rates, single point mutation rates, indel size, and similar statistics for any sequencing platform. To create training or testing datasets, FASTQSim has the ability to convert target sequences into in silico reads with matching error profiles. FASTQsim allows the user to simulate individual read datasets that can be used as standardized test scenarios for planning sequencing projects or for benchmarking metagenomic software. In this regard, in silico datasets generated with the FASTQsim tool hold several advantages over natural datasets: they are sequencing platform independent, extremely well characterized, and less expensive to generate.
    Downloads: 0 This Week
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  • 25
    Ruby classes for arbitrary precision floating point and arbitrary precision complex numbers. Keeps track of accumulated error. Uses overloaded operators. Also some testing programs. Used with a Ruby version of sode (sode.rb).Ruby versions new
    Downloads: 0 This Week
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