Search Results for "data modeling" - Page 2
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Showing 149 open source projects for "data modeling"
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Optimizer_sovkov
Constructing and optimizing general mathematical and physical models
We present the package Optimizer, aimed at constructing and optimizing general mathematical models of phenomena of versatile nature. It is written in the Matlab algorithmic language and is executed in the Matlab environment with partial functionality in Octave. The convenient visual interface and the detailed manuals are provided. The main benefit of the package is its capability to construct models of any level of complexity in a block-by-block manner. Elementary model blocks can be... -
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Kinetic.jl
Universal modeling and simulation of fluid mechanics upon ML
Kinetic is a computational fluid dynamics toolbox written in Julia. It aims to furnish efficient modeling and simulation methodologies for fluid dynamics, augmented by the power of machine learning. Based on differentiable programming, mechanical and neural network models are fused and solved in a unified framework. Simultaneous 1-3 dimensional numerical simulations can be performed on CPUs and GPUs. -
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tidyverse
Easily install and load packages from the tidyverse
tidyverse is a meta‑package that installs and loads a cohesive suite of R packages designed for data science, sharing underlying design principles, grammar, and data structures. Core components include ggplot2, dplyr, tidyr, readr, purrr, tibble, stringr, forcats, and more. It promotes tidy data workflows and consistency across tasks. -
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bctl
1-wire based boiler/DHW/distribution heating system controller
...It includes provision for dumping excess heat to the distribution system, as well as provision for heat recovery during a cool-down cycle. The design is based on the 1-wire family of sensors and data I/O components. The software package is written in C++ and utilizes the owcapi and owlib facilities of the open-source owfs package for all 1-wire transactions. The software architecture is based on the QP hierarchical state machine framework developed by Quantum Leaps, and utilizes their QM modeling tool for state machine template generation. ... -
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igspread
converts between IGES file and text file
Command-line interface program that converts between IGES file and text file. IGES files are compatible with most of CAD systems. This program permits you to convert curves and points created in CAD program into coordinates in text file or you can do the opposite - convert text files into curves. It is especially suitable for curves described by hundreds of coordinates, e.g. airfoil contours of aircraft wings. Output filename is either out.txt or out.igs. -
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OmicSelector
Feature selection and deep learning modeling for omic biomarker study
OmicSelector is an environment, Docker-based web application, and R package for biomarker signature selection (feature selection) from high-throughput experiments and others. It was initially developed for miRNA-seq (small RNA, smRNA-seq; hence the name was miRNAselector), RNA-seq and qPCR, but can be applied for every problem where numeric features should be selected to counteract overfitting of the models. Using our tool, you can choose features, like miRNAs, with the most significant... -
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geocompr
Geocomputation with R: an open source book
This repository hosts the source for Geocomputation with R, an open-source book covering spatial data analysis, visualization, and modeling using R. It teaches how to work with vector and raster data, coordinate systems, mapping, and geocomputation techniques using packages like sf, terra, tmap, and more. Actively maintained and updated for real-world geospatial workflows. -
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pyntcloud
pyntcloud is a Python library for working with 3D point clouds
This page will introduce the general concept of point clouds and illustrate the capabilities of pyntcloud as a point cloud processing tool. Point clouds are one of the most relevant entities for representing three dimensional data these days, along with polygonal meshes (which are just a special case of point clouds with connectivity graph attached). In its simplest form, a point cloud is a set of points in a cartesian coordinate system. Accurate 3D point clouds can nowadays be (easily and... -
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This project moved to GitHub in 2021 and is available at: https://cbrinkrolf.github.io/VANESA/ This tool is a platform-independent software to create individual pathways and to examine biological networks of distributed, heterogeneous data sources, e.g. KEGG, BRENDA. VANESA also offers Petri net modeling of extended hybrid Petri nets which can be also simulated using the OpenModelica framework.
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PCRaster
PCRaster environmental modeling software
Note: Active projects have been copied to Github: https://github.com/pcraster News, project information, documentation and more are available at http://www.pcraster.eu PCRaster is a collection of tools and software libraries tailored to the construction of spatio-temporal environmental models. Application domains are amongst others hydrology (rainfall-runoff, global water balance, groundwater (with Modflow)), ecology, or land use change. Two scripting languages (PCRcalc and Python)... -
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Quan is designed to model physical quantities in C++ programs. Advantages include automated dimensional analysis checking, automatic unit conversions, self documentation of code.
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Objectron
A dataset of short, object-centric video clips
The Objectron dataset is a collection of short, object-centric video clips, which are accompanied by AR session metadata that includes camera poses, sparse point-clouds and characterization of the planar surfaces in the surrounding environment. In each video, the camera moves around the object, capturing it from different angles. The data also contain manually annotated 3D bounding boxes for each object, which describe the object’s position, orientation, and dimensions. The dataset consists... -
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This data set contains data for virtual experiments for an undergraduate course from the Pontificia Universidad Católica del Perú. It constitutes the Supporting Information for a scientific article entitled "Application of blended physical-virtual experiments and flipped instruction in a fundamental fluid mechanics course: a design-based research study" submitted to Computer Applications in Engineering Education. The educational material contained in this dataset is shared under the GNU...
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We are developing data standards and software tools that implement these standards to develop a systemic approach to modeling, capturing, analyzing and disseminating flow cytometry data.
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The latest ESMF development is happening in GitHub: https://github.com/esmf-org/esmf https://earthsystemmodeling.org The Earth System Modeling Framework provides high-performance software infrastructure and superstructure for the construction and coupling of climate, weather, and data assimilation applications.
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PBTK Optimizer
Application for optimization of parameters in PBTK models
...Other parameters can be determined through in-vitro experiments or through extrapolation using published equations. When it is impractical to use these methods to estimate a parameter, techniques can be used to optimize parameters so that model results best fit validation data. This tool was designed to optimize a user-specified list of parameters to a user-specified PBTK model. The user also controls validation data and optimization algorithms. In addition to optimized parameters, the tool outputs statistical information about the fit of the optimized model. -
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openLCA
professional open source software for LCA
Software for sustainability assessment, highly modular; initially focused on Life Cycle Assessments. -
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GEOMS2
Geostatistics and geosciences modeling software
GEOMS2 is a geostatistics and geosciences modeling software. Provides interface for grid (mesh), point, surface and data (non-spatial) objects. It has a 3D viewer and 2D plots using the well known Python engines Mayavi and Matplotlib. It has several functions to manipulate your data as well as provide univariate and multivariate analysis. NOTE: The software is still an early beta. -
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ATLAS_mPBPK
Modeling and Simulation of mPBPK models
ATLAS mPBPK is a MATLAb-based tool for modeling and Simulation of minimal Physiology Based Pharmacokinetic (mPBPK) models of small and large molecules. The tool enables the users to perform: i) PK data visualization, ii) simulation, iii) parameter optimization, and iv) local sensitivity analysis (SA) of mPBPK models in a simple and efficient manner. -
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ImatiSTL
Fix STL files for 3D printing
ImatiSTL is a C++ library for applications that need to finely post-process raw polygon meshes represented by STL files. It is particularly useful in 3D printing scenarios: the repairing functions provided by ImatiSTL bridge the gap between printable meshes and real-world meshes with diverse potential defects and flaws (e.g. degenerate triangles, self-intersections, surface holes, ...). ImatiSTL provides both functions for local mesh repairing and methods for global remeshing. Local... -
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A spring-based 3D graph layout tool written in Java. Rendering is performed in OpenGL via the JOGL library.
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Gellish - A Product Modeling Language
Formalized English (o.a.) for standardized information exchange
Formal English (Formal Dutch, etc.) are members of the Gellish family of computer interpretable languages for modeling products and processes and their properties as well as for knowledge representation, modeling of requirements and for modeling definitions. The project is intended for further development of Formal English and its Taxonomic Dictionary-Ontology. Software tools for supporting implementations are developed as a https://github.com/ project. The 2008 version of the taxonomic... -
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PMM-Lab
Predictive Microbial Modeling plug-in for KNIME
PMM-Lab is an open-source extension to the Konstanz Information Miner (KNIME). It consists of three components: • a library of KNIME nodes (called PMM-Lab), • a library of “standard” workflows • an HSQL database.to store experimental data and microbial models. Altogether these components are designed to ease and standardize the statistical analysis of experimental microbial data and the development of predictive microbial models (PMM). Users can apply PMM-Lab to proprietary or public... -
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Open Babel is a chemical toolbox designed to speak the many languages of chemical data. It's an open, collaborative project allowing anyone to search, convert, analyze, or store data from molecular modeling, chemistry, biochemistry, or related areas
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PANTHER project: software for modeling of protein sequence and function evolution, and tools for applying these data to the analysis of genome data, expression data and coding SNPs. Details available at http://www.pantherdb.org.
