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Secondary Structure Analysis Tool for data selection and statistics
SecStAnT is a tool for the automatic creation of data-sets of structures from Protein Data Bank (PDB) with user-defined structural composition, and for the calculation of their internal variables distributions.
SecStAnT is able to
1. Select from PDB data sets of structures based on user specified secondary structures (defined based on internal PDB classification or on DSSP) and/or sequence motives.
2. Build Data-sets at different levels of resolution (all atoms, only backbone, only Cα...
Knowtator is a general-purpose text annotation tool that is integrated with the Protégé knowledge representation system. Knowtator facilitates the manual creation of training and evaluation corpora for a variety of biomedical language processing tasks.
A powerful, versatile tool for offilne spike analysis and sorting
WaveSorter emphasizes dynamic visualization and versatility. Slider controls let the user select any coefficient or sample from any of several transforms, which can then be plotted to either axis of a 2D histogram (scatterplot). Within the waveform space, cursor-based controls let the user select subregions of the waveform space or individual waveforms to view. The user may cluster waveforms manually or via one of several popular clustering programs. The classification along with waveform...
clupan is a tool for performing the cluster expansion and several Monte Carlo simulations in multicomponent alloys. clupan can be used for predicting ground state structures and evaluating phase diagrams on the basis of results of DFT calculations.
Data mining tool for sequences (e.g. trajectories on a map, visited web pages, etc.) that creates a succinct description of the sequences, given a taxonomy (e.g. regions and sub-regions in the map, categories and sub-categories of pages, etc.).
Interactive mesh creationtool. Discretizer will create geometry and meshes for three dimensional flow simulations (CFD). Geometry import is not a goal: Discretizer will be furiously fast geometry builder(on many common engineering applications at least)
The aim of the project is the creation of an multiuser, webenabled, datahandling, processing and visualisation tool for engineering data from the real word - with Datacollection, Charting, Mapping, Alerting, Messaging and Reporting capabilities .....
IdCREATE stands for "Idea Creation, Representation & Execution Automated Tools and Engine". This is intended to be a graphical tool for 1) representing your thoughts and ideas in a mindmap-like charts and 2) implementing them as code, article text, etc
Build a scalable voice experience with the API that's connecting millions around the world.
With Twilio Voice, you can build unique phone call experiences with one API, to create, receive, control and monitor calls with just a few lines of code. Create an engaging voice experience that you can quickly scale and modify with a wide array of customization options and resources.
BDR (Beowulf Design Rules) is a vendor-neutral software tool that quickly evaluates millions of alternative architectures to determine the best cluster hardware design for your application requirements and budget (e.g., money, space, power consumption).
Biolet is project aimed to analyze genomic DNA sequences using wavelets. Of additional interest may be a batch processing tool for doing round-robin scheduling of jobs on a beowulf cluster. For that checkout the project robin from the CVS.
DGC is a tool for the creation of digital netlists. DGC does an optimization and technology mapping for an abstract description of boolean functions and state machines. Output formats are EDIF, XNF and VHDL. Input formats are KISS, PLA and others.
See also: http://gitorious.org/dgc-gtk/
PLEASE, NOTE THAT THIS PROJECT IS DEAD !!!
A 3D avatar that animate symbols from Sign Write language. It suppor the creation of static
symbols and will support creation of animation files too.
This project aim to develop a suite of tool to ease the development of ASIC/FPGA solution. The final program should be an IDE enabling the creation and specification of a project from it's start to finish.