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Showing 61 open source projects for "tree"
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Find Hidden Risks in Windows Task SchedulerWindows Task Scheduler might be hiding critical failures. Download the free JAMS diagnostic tool to uncover problems before they impact production—get a color-coded risk report with clear remediation steps in minutes.
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Vibes don’t ship, Retool doesVibe coding tools create cool demos, but Retool helps you build software your company can actually use. Generate internal apps that connect directly to your data—deployed in your cloud with enterprise security from day one. Build dashboards, admin panels, and workflows with granular permissions already in place. Stop prototyping and ship on a platform that actually passes security review.
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Treebolic is a Java suite (including library) whose purpose is to give a hyperbolic rendering of hierarchical data. A tree is rendered with nodes and edges but display space is subject to a particular curvature (hence the name).
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Scaffold Hunter is a JAVA-based software tool for the analysis of structure-related biochemical data. It enables generation of and navigation in a scaffold tree hierarchy annotated with various data.
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Divide and Conquer Treemaps
Divide and Conquer Treemap Visualisation
The project develops new new techniques and algorithms for quickly partitioning and visualizing very large hierarchical structures within a variety of arbitrary shapes and space using Divide and Conquer approach for Treemaps. Related publications: https://www.sciencedirect.com/science/article/pii/S1045926X1500066X https://dl.acm.org/doi/pdf/10.1145/2493102.2493112 -
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Toxtree: Toxic Hazard Estimation
Toxicity prediction for chemical compounds
...The latest version includes the following toxicity prediction modules: -Cramer rules (oral toxicity) -Toxicity mode of action via Verhaar scheme -Skin irritation and Eye irritation prediction -Benigni / Bossa rulebase for mutagenicity and carcinogenicity prediction -START biodegradation and persistence prediction -Skin sensitisation reactivity domain -Kroes TTC Decision tree -SMARTCyp - Cytochrome P450-Mediated Drug Metabolism and metabolites prediction -Structure Alerts for the in vivo micronucleus assay in rodents (ISSMIC) -Structural Alerts for Functional Group Identification (ISSFUNC) -Structural alerts associated with covalent protein binding and DNA binding. - Ames mutagenicity Toxtree provides a plugin framework to incorporate different approaches to the estimation. ... -
Atera all-in-one platform IT management software with AI agentsAtera’s AI agents don’t just assist, they act. From detection to resolution, they handle incidents and requests instantly, taking your IT management from automated to autonomous.
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Nexplorer is a web-based phylogenetic browser, used to view and edit comparative data, and ideal for creating publication-quality views in which the tips of a tree are aligned with the rows of a character matrix (e.g., a sequence alignment).
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Program for creating Verilog synthesizable XOR trees for high performance designs. Supports creation of Hamming Code (ECC) generators, checkers, and GF2 Multipliers.
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Penthode
Penthode simulates, draw and plot electrical power distributions
Given a simple net-list describing the high level power architecture of your system Penthode: - simulates the voltage and current from device turn on to the steady state. - highlights components working out of specification - draws a nice power tree diagram showing the currents/powers balance - plots node transient voltage and gate current waveforms It is possible to change component parameters interactively to improve the design -
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...Obtaining the teachingbox: FOR USERS: If you want to download the latest releases, please visit: http://search.maven.org/#search|ga|1|teachingbox FOR DEVELOPERS: 1) If you use Apache Maven, just add the following dependency to your pom.xml: <dependency> <groupId>org.sf.teachingbox</groupId> <artifactId>teachingbox-core</artifactId> <version>1.2.3</version> </dependency> 2) If you want to check out the most recent source-code: git clone https://git.code.sf.net/p/teachingbox/core teachingbox-core Documentation: https://sourceforge.net/p/teachingbox/documentation/HEAD/tree/trunk/manual/
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popt4jlib
Parallel Optimization Library for Java
popt4jlib is an open-source parallel optimization library for the Java programming language supporting both shared memory and distributed message passing models. Implements a number of meta-heuristic algorithms for Non-Linear Programming, including Genetic Algorithms, Differential Evolution, Evolutionary Algorithms, Simulated Annealing, Particle Swarm Optimization, Firefly Algorithm, Monte-Carlo Search, Local Search algorithms, Gradient-Descent-based algorithms, as well as some well-known... -
The Most Powerful Software Platform for EHSQ and ESG ManagementChoose from a complete set of software solutions across EHSQ that address all aspects of top performing Environmental, Health and Safety, and Quality management programs.
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BisSNP
Bisulfite-seq/NOMe-seq SNPs & cytosine methylation caller
Now in Github: https://github.com/dnaase/Bis-tools/tree/master/Bis-SNP BisSNP is a package based on the Genome Analysis Toolkit (GATK) map-reduce framework for genotyping in bisulfite treated massively parallel sequencing (Bisulfite-seq, NOMe-seq and RRBS) on Illumina platform. It uses bayesian inference with either manually specified or automatically estimated methylation probabilities of different cytosine context(not only CpG, CHH, CHG in Bisulfite-seq, but also GCH et.al. in other bisulfite treated sequencing) to determine genotypes and methylation levels simultaneously. ... -
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MYRA
A collection of ACO algorithms for the data mining classification task
MYRA is a collection of Ant Colony Optimization (ACO) algorithms for the data mining classification task. It includes popular rule induction and decision tree induction algorithms. The algorithms are ready to be used from the command line or can be easily called from your own Java code. They are build using a modular architecture, so they can be easily extended to incorporate different procedures and/or use different parameter values. This project is now hosted at: https://github.com/febo/myra -
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VeriSiMPL
Verification via biSimulations of Max-Plus-Linear models
...The LTS finite abstractions are shown to either simulate or to bisimulate the original MPL system. LTS models are to be verified against given specifications expressed as formulae in Linear Temporal Logic (LTL) and Computation Tree Logic (CTL). The toolbox intends to leverage the NuSMV model checker. Models are to be expressed in the C++ language. The abstraction procedure runs in C++. The generated LTS is exported to the NuSMV language. As such, it can be fed, along with a specification of interest, to the NuSMV model checker. If you are more familiar with JAVA language, we suggest you to try VeriSiMPL version 2.0 which is fully based on JAVA. ... -
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Elexis Praxisprogramm
An Eclipse RCP program for all aspects of a (Swiss) medical practice
...At http://elexis-forum.ch/ users have a place to share their experiences with other peoples. Developers and anybody trying to compile Elexis from scratch should look at https://github.com/elexis/elexis-3-core/tree/master/ch.elexis.sdk The documentation is found under http://wiki.elexis.info/ -
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physicsmata
API for all possible cellular automata that work same at all angles
...Its parameters are sums of screen brightness (n color dimensions are optional) at concentric circles around each point, efficiently costing only the perimeter of those circles (instead of the area) because of the tree of squares. You can create any function, or to get started try the visual function editor where each click changes if a column is sine/sigmoid/half/double/exp/etc or which of the 0, 1, or 2 columns to the left are its params. Every click changes the patterns of waves seen on the left, which run that function you visually built at each point. -
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Toolkit to examine the topology of a phylogenetic tree, place amino acid substitutions on specific branches, polarize them and compare amino acid sequences of homologous proteins to answer a wide range of questions about protein evolution.
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Biogenesis X Mod
Mod of the evolution simulation and artificial life program Biogenesis
...Compared to the original project, this modification explores the following features: * alternative mutation mechanisms * an alternative stress-based aging mechanism It is based on the new_design branch of Biogenesis (https://sourceforge.net/p/biogenesis/git/ci/new_design/tree/), its source code can be obatained from http://sourceforge.net/p/biogenesisxmod/code/ci/xmod/tree/ If you want to post a review, remember that this is only a modification, so comment on my changes, not on the simulation. Biogenesis discussion forum: https://sourceforge.net/p/biogenesis/discussion/ -
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Immutable Sparse Wave Trees (WaveTree)
Realtime bigdata tool for bit strings up to 2^63 based on AVL forest
Realtime bigdata tool at the bit level based on immutable AVL forest which can be run in memory or, in future versions, as a merkle forest like a blockchain. Main object is a sparse bit string (Bits) that efficiently scales up to 2^63 bits normally compressed as forest has duplicated substrings. Bits objects support reading bit, byte, short, int, or long (Java primitives) at any bit index in 64 bit range. Example: instead of building a class to hold a header and then data, represent all of... -
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TopiaryExplorer has moved to GitHub. Find the new project info page here: https://github.com/qiime/Topiary-Explorer. If you need help or would like to add a bug/feature request, please do so there.
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Cost-sensitive Classifiers
Adaboost extensions for cost-sentive classification
Adaboost extensions for cost-sentive classification CSExtension 1 CSExtension 2 CSExtension 3 CSExtension 4 CSExtension 5 AdaCost Boost CostBoost Uboost CostUBoost AdaBoostM1 Implementation of all the listed algorithms of the cluster "cost-sensitive classification". They are the meta algorithms which requires base algorithms e.g. Decision Tree Moreover, Voting criteria is also required e.g. Minimum expected cost criteria Input also requires to load an arff file and a cost matrix (sample arff and cost files are uploaded for users' reference) This extension uses weka for classification and generates the classification model along with confusion matrix. For given dataset and cost matrix -
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Homemotion
Homemotion is a Java based control center for home automatation.
...The functionality provided by default includes: * Control Devices * Sensors * Scenarios * Security Devices and Alarms * Automatic Schedules * Automatic Event Triggers * An extendable Macro Engine, by default supporting Javascript and Java * A tree managed navigation * User Management and Authorization * Multiple Buildings Support -
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TreeGrOSS Forest Growth Simulation
Software for modelling tree growth
Tree Growth Open Source Software is a Java based version of the forest growth simulator for north west Germany BWINPro. -
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TreeLiker
TreeLiker is a collection of fast algorithms for working with complex
...In experiments with real-life data, the algorithms were shown to be able to construct complete non-redundant sets of patterns for chemical datasets involving several thousands of molecules as well as for comparably large datasets from genomics or proteomics. The included relational learning algorithms are tailored towards so-called tree-like features for which some otherwise very hard sub-problems (NP-hard) become tractable. -
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Javamony
A Student's Approach to the Phylogenetic Problem
Based on the not-so-successful Pysimony (https://sourceforge.net/projects/pysimony/), the same determined student takes another go at the phylogenetic problem. Javamony is invoked as follows: java -jar Javamony.jar [input.fasta] [random / stepwise (starting tree)] [# of bootstraps] [outgroup taxon #1] [outgroup taxon #2] ... Not meant as a competitive phylogenetic inference program, Javamony is an opportunity for me to acquire the Java language while learning to address and solve fundamental problems in phylogenetics. Therefore, for my own educational benefit, all code is original. Of course, there are probably a good deal of mistakes as well. ... -
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JBoost is a simple, robust system for classification. JBoost contains implementations of several boosting algorithms in an alternating decision tree framework. In addition, JBoost provides extensible software for adding more learning algorithms.
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SweetOnionCCG2PTBConverter
A tool that converts CCGBank to PTB
Conversion between different grammar frameworks is of great importance to comparative performance analysis of the parsers developed on them. This tool can convert CCG derivations to PTB trees by using Max Entropy models as well as visualizing the tree graphs. The main technical innovation presented here is the effective conversion method which achieves a F score over 95%.
