Search Results for "java projects on linux" - Page 9
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Showing 4235 open source projects for "java projects on linux"
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Biogenesis Color Mod
Mod for evolution simulation and artificial life program Biogenesis
You can download the Color Mod at the Biogenesis main site too (included in the main download now). You also find the sourcecode there. If you want to post a review, remember that this is only a modification, so comment on my changes, not on the simulation. Original project by Joan Queralt Molina: https://sourceforge.net/projects/biogenesis/ Includes Tyler Colemans "Features Mod": https://sourceforge.net/projects/biogenesisfeatu/ Biogenesis discussion... -
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UIBM (= Universal Individual-Based Model) is an agent-based simulation/3d-dvisualization of the dynamics within multispecies plant communities of Northwest Europe, parameterized from databases using universal scaling laws.
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awVoronoi
Computes dual structure of 3D additively weighted Voronoi diagrams
A console application that reads 3D points with weights and computes the dual structure (a set of tetrahedral cells) of the additively weighted Voronoi diagram. The diagrams can be visualized in the Viewer application (Windows only), which can be downloaded separately (Files/Viewer.zip). Viewer is no longer developed. The latest release is 1.0.6. -
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mXparser - Math Parser Java C# Library
A flexible mathematical expressions parser for JAVA, Android, C# .NET
mXparser is highly flexible parser of math expressions. Software provides easy to use API for JAVA, Android, C# .NET/MONO (CLS). Main functionalities: - basic operators, i.e.: +, -, *, ^, ! - Boolean logic operators i.e.: or, and, xor - binary relations i.e.: =, <, > - math functions (large library of 1-arg, 2-arg, 3-arg - - functions) i.e.: sin, cos, Stirling numbers, log, inverse functions - constants (large library), i.e.: pi, e, golden ratio - n-args functions i.e.: greatest... -
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JoBimText GPL
Projects with GPL licensed resources
This project contains project which are dependent on other projects/libraries which are under the GPL licence -
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Cylindrical Alignment App
Arranges alignments in a rotating cylinder
The Cylindrical Alignment App is the successor to Cylindrical BLAST Viewer. Similarly, it arranges search or other comparisons, against their "axis". Searches can be made by Basic Local Alignment Search Tool, ClustalW, or Gene Machine to name a few. This version does not require downloading or installing Java3D, and has more modern GUI features. -
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sRNAWorkbench
The UEA sRNA Workbench
A suite of tools for analysing small RNA (sRNA) data from Next Generation Sequencing devices. Including expression profiling of known mirco RNA (miRNA), identification of novel miRNA in deep-sequencing data and identification of other interesting landmarks within high-throughput genetic data -
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AtomicJ
Application for analysis of AFM data
AtomicJ is an application for analysis of force microscopy recordings, including images and force curves. It allows for fast and reliable processing of single force curves and force maps, providing estimation of the mechanical properties of the sample. AtomicJ supports a wide range of contact mechanics models, including the models for blunt tips, the corrections for the effect of finite sample thickness, models of adhesive contact and models of spherical indentation of hyperelastic... -
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PUPIL (Program for User Package Interface and Linking), is a software environment that allows developers to link quickly and efficiently together multiple pieces of software in a fully automated multi-scale simulation. More specifically, it supports QM/MM MD simulations where the user might choose among any of the different MD engines and QM engines, which are connected to PUPIL as external programs through a tiny specific interface. One of the main advantages here is that the user can use...
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JoBimText
Linking Language to Knowledge with Distributional Semantics
JobimText is a software solution for automatic text expansion using contextualized distributional similarity. It provides text analysis tools for large corpora and has capabilities to create distributional semantic models (JoBimText models) and multi-word expressions. -
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JQM Java Quine McCluskey
JQM - Java Quine McCluskey for minimization of Boolean functions.
Java Quine McCluskey implements the Quine McCluskey algorithm with Petrick’s Method (or the method of prime implicants) for minimization of Boolean functions. This software can be used both for learning and solving real problems. As a learning/teaching tool, it presents not only the results but also how the problem was solved as well as how to use Karnaugh Maps to solve the problem. Up to sixteen functions of sixteen variables can be minimized. A graphical interface is provided for entering... -
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This project moved to GitHub in 2021 and is available at: https://cbrinkrolf.github.io/VANESA/ This tool is a platform-independent software to create individual pathways and to examine biological networks of distributed, heterogeneous data sources, e.g. KEGG, BRENDA. VANESA also offers Petri net modeling of extended hybrid Petri nets which can be also simulated using the OpenModelica framework.
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BitLogic
Simple Java computer algebra calculator
A calculator that solves many types of problems including solving equations computing derivatives and integrals simplifying expressions graphing equations 2d and 3d reverse polish notation, algebraic and word based interpreter infinite writing board for writing out equations requires java 11 or more -
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Karto
Tool to work on map data, to check the data and generate your own maps
Karto allows to calibrate a scanned map (or aerial photos) with some known geo-points (Lambert, UTM, ...). After that, you can add any points (GPS points) in the map to build your own map. You can also add a transparent GIF image in the map after calibration (cave, mines, roads, ...). You can realize your own cartes with the data you add inside adding/showing/hiding layers of data. You can import/export your data files (after checking and correcting them) in differents formats. -
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GroIMP
Growth-grammar related Interactive Modelling Platform
Important: Groimp migrates to Gitlab. You can find the latest code at "https://gitlab.com/grogra/groimp/". The version on Sourceforge will not be updated anymore. The modelling platform GroIMP is designed as an integrated platform which incorporates modelling, visualisation and interaction. It exhibits several features which makes itself suitable for the field of biological or ALife modelling: The “modelling backbone” consists in the language XL. It is fully integrated, e.g., the... -
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myNetPCB
Community driven PCB Layout and Schematic capture software
PCB Layout and Schematic capture tool for Win/Linux/Mac. Source code at https://github.com/sergei-iliev/myNetPCB -
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Perceptron
The birth of modern video feedback art.
Perceptron is a video feedback engine with a variety of extraordinary graphical effects. Perceptron is an endless flow of transforming visuals. Perceptron * recursively transforms images and video streams in realtime and produces a combination of Julia fractals, IFS fractals, and chaotic patterns due to video feedback * evolves geometric patterns into the realm of infinite details and deepens the thought * records animations (movies) * saves and opens presets... -
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SBW (Systems Biology Workbench)
Framework for Systems Biology
The Systems Biology Workbench(SBW) is a framework for application intercommunications. It uses a broker-based, distributed, message-passing architecture, supports many languages including Java, C++, Perl & Python, and runs under Linux,OSX & Win32. It comes with a large number of modules, encompassing the whole modeling cycle: creating computational models, simulating and analyzing them, visualizing the information, in order to improve the models. All using community standards, such as SED-ML, SBML and MIRIAM. -
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protoFrameworkSamples
Samples for the protoFramework project
Samples for the protoFramework project. See https://sourceforge.net/projects/protoframework/ for the master project. This is a Dassault Aviation project -
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NGSpop
NGSpop: identifying & visualizing sequence variation in deepvariant
*NOTICE* The official software(NGSpop) will be updated soon, so please visit us in 2/29. Thank you. -
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Extended Java WordNet Library
extJWNL is a Java library to handle dictionaries in WordNet format.
extJWNL (Extended Java WordNet Library) is a Java API for creating, reading and updating dictionaries in WordNet format. extJWNL is an upgraded version of JWNL. The library features support for creating, editing and writing dictionaries; dictionary encodings, including UTF-8; Java generics; huge dictionaries; instance dictionaries and static singletone dictionary; Maven and more. -
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CompPad is a LibreOffice extension that provides live mathematical and engineering calculations within a Writer document. It is intended to provide a free / open-source alternative to Mathcad .
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Kalypso is an open source application for geospatial modelling and simulation. It is primarily developed to be a user friendly tool for GIS-based modelling and simulation of hydrological and hydraulic numerical models.
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PAMGUARD
Detection Classification and Localisation of marine mammals
The PAMGUARD project develops software to help detect, locate and classify marine mammals using Passive Acoustic Monitoring. This project is being migrated to github at https://github.com/PAMGuard. Please go there for the latest updates. thank you sourceforge for hosting us for all these years. -
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he JAVA library is designed to read JPL DE/LE ephemerides (DE200, DE405, DE406, DE421, DE422, DE430, DE431, DE440 and DE441) and to calculated the position and velocity of the Sun, Moon, eight major planets and Pluto, also the earth nutations and the lunar librations if they are part of the ephemeris.
