Open Source Java Scientific/Engineering Software - Page 76

Virtual instrumentation software, currently designed for modifying automobile engines. Intended as a modular framework to communicate with devices on an IO port (serial, parallel etc.) and allow a visual representation of the instrument.

HeartBit is a GPL Java/SuperWaba app to interact with the Polar heartrate monitoring watches. This software is targeted at PalmOS and Windows users. It aims at offering the features found in the Precision Performance app. from Polar.

Making Hebrew properly searchable by IR software. Right now, most work is being done in our mailing list (planning), and on our github repository (concept code, see below).

Hedgehog is a Java library for simple distributed computing. Your code instantiates a server, post jobs, and is notified when clients return the results. The clients need not have the job classes. Hedgehog uses JmDNS, XStream, XML-RPC, and Jetty.

HeliconiusDB is a project to develop a database schema and web-based software tools for the study of Heliconius butterflies (and other organisms) in evolutionary biology.

This library provides expression parsing functionality to Java applications, and includes support for all standard mathematical constants and functions, as well as providing functionality for user defined variables and functions.

The Helsinki Finite-State Transducer toolkit is intended for processing natural language morphologies. The toolkit is demonstrated by wide-coverage implementations of a number of languages of varying morphological complexity.

HephaisTK is a toolkit for rapid prototyping of multimodal interfaces. HephaisTK uses SMUIML, a simple markup language for describing human machine multimodal interaction scenarios and integration mechanisms.

A tool for analyzing and visualizing open source software evolution

Pure Java IDE for brainfuck, which follows the principle of KISS.

JGenAlg is a java toolbox for working with metaheuristic procedures (Genetic Algorithms, Island model, Particle Swarm, Ant Swarm). JGenAlg have a GUI, a Client/Server architecture, work with threads and can be use under distributed enviroments.

HicCalc is a scientific utility written in Java,that runs on all java supported operating systems. The current release contains the graphing part of the product. Please visit http://www.hicsys.com/hiccalc.htm to check out the online demo.

HmmSDK is a hidden Markov model (HMM) software development kit written in Java. It consists of core library of HMM functions (Forward-backward, Viterbi, and Baum-Welch algorithms) and toolkits for application development.

HidroSIG is a GIS that supports raster and vectorial maps with modules oriented to the hydrological analysis, time series, remote sensing and more. It has been made 100% in java using VisAD for data visualization and using MySQL to storage all data.

The software is related to the PhD thesis of Zoltán Farkas, used to simulate work distribution and processing in hierarchical desktop grid systems.

Experiments on Statistical Modeling of High-Dimensional Data

The project intends to create tutorial in “High-quality programming code construction”. The tutorial will introduce the reader to the contemporary principles of writing high-quality, highly reliable, easy-to-read and maintainable programming.

HIGH-THROUGHPUT TABULAR DATA PROCESSOR (HTDP) is Java application that is intended to facilitate data exploration and reduction tasks in large text files resulting from high throughput technologies, e.g. massively parallel sequencing or microarrays. The software has been optimized for microarray and deep parallel sequencing data, however it can accept any character delimited tabular data sets. HTDP can also import, process and convert Variant Call Format (VCF) files ver. 4.0, 4.1 and 4.2 (http://samtools.github.io/hts-specs/VCFv4.2.pdf). HTDP provides quick filtering functionality and can process data consisting of single or multiple input files. Citation: Madanecki P, Bałut M, Buckley PG, Ochocka JR, Bartoszewski R, Crossman DK, et al. (2018) High-Throughput Tabular Data Processor – Platform independent graphical tool for processing large data sets. PLoS ONE 13(2): e0192858. https://doi.org/10.1371/journal.pone.0192858

A java class bundle with several small working applications designed to simulate and support lighter than air vehicle operation in the upper atmosphere.

Hiketracker GPS ist ein Projekt für die Navigation im Gelände mittels PocketPC und GPS-Empfänger mit Bluetooth-Verbindung in Java. Hiketracker GPS is a Java based project to navigate in the landscape on PocketPC and GPS-receiver with Bluetooth-connectio

A histogram library for Java that accepts large datasets with any distribution or range with a very small memory footprint, needs no pre- or post-processing, and provides several statistical functions.

A library of data objects that simulate mathematical neurons, including classic Hodgkin-Huxley neurons and theta neurons.

A simple tool for molecular biologists (or similar) to estimate the size of electrophoresis gel bands. This can be applied to SDS-Page-,Native-Protein-, DNA, RNA, *whatever* gels as long as a weight/size standard lane is present on the gel.

In consanguineous families, as a result of inheriting the same genomic segments through both parents, the individuals have stretches of their genomes that are homozygous. This situation leads to the prevalence of recessive diseases among the members of these families. Homozygosity mapping is based on this observation and several recessive disease genes have been discovered with the help of this technique in consanguineous families. The researchers typically use SNP arrays to determine the homozygous regions and then search for the disease gene by sequencing the genes within this candidate disease loci. Recently, the advent of next generation sequencing enables the concurrent identification of homozygous regions and the detection of mutations relevant for diagnosis, using data from a single sequencing experiment. In this respect, we have developed a novel tool that identifies homozygous regions using deep sequence data. Using *.vcf files as an input file, our program identifies the majo

Homemotion is a Java based application for home automation. It uses of an internal notification bus that is connecting different components. The usage of generic attributes and adapters allows to add (and mix) different hardware backends. The default UI interface is build using newest JavaFX technology and also includes a small JavaFX UI framework. It should be easy to implement/provide additional or custom hardware backends or UI functionality by implementing corresponding plugins. The functionality provided by default includes: * Control Devices * Sensors * Scenarios * Security Devices and Alarms * Automatic Schedules * Automatic Event Triggers * An extendable Macro Engine, by default supporting Javascript and Java * A tree managed navigation * User Management and Authorization * Multiple Buildings Support