Open Source Java Scientific/Engineering Software - Page 75

Wheeler is a Java applet for calculating photon orbits around black holes.

This application talks to a GPS device over the NMEA protocol via the WIGSGPSComm API. The first version of the WIGS application will present the GPS data in an intuitive fashion, and later releases will be further enhanced with special map support.

Winnow is a graphical application for importing and organising articles from PubMed. It gives access to abstracts, full text and allows references to be saved. It can also predict what a user will find interesting through adaptive filtering.

This is a program to track amateur radio weather spotters for SkyWarn by displaying a map of the watch area on which the user can place virtual pushpins and info where the location of the storm spotters are, whether they be stationary or mobile.

XMLMath evaluates mathematical, logical or textual expressions described in xml and prints the result. For example, to compute the result of 1 + 1, you would write: <add> <long value="1"/> <long value="1"/> </add>

XScrape analyzes forum posts to map relationships among users.

The Xholon project explores: software as systems of linked nodes, organized hierarchically. The Xholon toolkit supports this back-to-basics approach, and demonstrates practical benefits through examples from numerous domains.

The project is about turn-based, networked multiplayer, non-cooperative, zero-sum, abstract strategy board games (e.g. Chess, Go, Reversi variants, etc.) on 3D-visualized polyhedra and related recreational (discrete, computational) mathematics.

GUI utility in pure Java for viewing and editing XML content; example of application built with Superficial http://superficial.sourceforge.net

Growing out of an initiative on the YBW forums this initial project aims to develop a workable open source autopilot control package. The intention is to expand this into an open source initiative to support general onboard marine instrumentation.

Zero Sum Game Solver Java Library is open source java library to solve 2-player finite zero-sum games. This programs solve zero-sum games with linear programming.

ZAE is a Zoomable multiple sequence Alignment Editor

Many biological laboratories dealing with genomic samples are facing the problem of sample tracking, both for pure laboratory management and efficiency, and for internal policies, such as Good Laboratory Practices (GLP). Our laboratory exploits PCR techniques and next-generation sequencing (NGS) methods, to perform high-throughput integration site monitoring in different clinical trials and scientific projects, based on the delivery of therapeutic genes by viral vectors integrating into the genome of target cells. We process around 1500 samples/year resulting in hundreds of millions of sequencing reads, requiring automation and posing new challenges in data storage, monitoring of sample process and computational tools for analyses. Thus we need to standardize data management and tracking systems, built on a scalable, flexible structure with an easily accessible and web based interface, what is usually called Laboratory Information Management System (LIMS).

Alf is a collection of tools for experimenting with Formal Languages. Alf is portable and easy to use. It has been developed at Politecnico di Milano.

Dump Protocol is a communication protocol designed to distribute informations and alerts to emergency centres and rescue teams. It can be upgraded, scaled and improved. This project implements Dump Protocol on Android platform.

Patient record file; includes: patholgogies, vaccines, treatments...

ATOM is an OMERO client which allows automated import of image data into OMERO. ATOM is provided as is without any guarantees or warranty. The author is not responsible for any damage or losses of any kind caused by the use or misuse of the programs.

brCluster is a class library, written in java, that implements generic clustering algorithms carefully designed to allow its aplication in any kind of data. The algorithms implemented are K-means and Hierarchical Clustering (Simple and Complete Link).

cnvHiTSeq is a set of Java-based command-line tools for detecting Copy Number Variants (CNVs) using next-generation sequencing data. cnvHiTSeq uses standard BAM files as input.

A 2D rigid physics simulator and set of genetic algorithm tools. Evolve cute little walking creatures.

NMR Spectroscopy tools. See http://connjur.uchc.edu

Optimization tool that mimics the darwinian reproduction, selection, mutation process. It has 2 components: the optimization algorithm and an interpretar to define function to optimize and constraints. It is all written in java (netbeans).

Sistema echo en java para pasar un examen especial de matematicas V, con la ayuda de la libreria JEP. Realiza la integracion y derivaicion de algunas funciones matematicas. Hecho en Netbeans IDE. Todo confines eucacionales si alguien puede contribuir

Tools for calculating similarity (including lexical and syntactic) between speakers in dialogue, across standard and randomised corpora.

easy fusion is a java-based framework that intends to automatically deploy and control information fusion systems (IFS) on distributed and dynamic resources.