Open Source Java Scientific/Engineering Software - Page 75

This is a framework used to decompose hierarchical graphs, i.e.,graphs which were created from or contain a hierarchy of modules. Each module is reused several times in the hierarchy. This may be useful to reverse-engineer human constructs like electronic equipment, manufactured machines, or bureaucratic hierarchies; but also to decompose natural constructs like gene-relation or protein-relation nets.

HSRA is a MapReduce-based parallel tool for mapping reads from RNA sequencing (RNA-seq) experiments. RNA-seq analyses typically begin by mapping reads to a reference genome in order to determine the location from which the reads were originated, which is a very time-consuming step. This tool allows bioinformatics researchers to efficiently distribute their mapping tasks over the nodes of a cluster by combining a fast multithreaded spliced aligner (HISAT2) with Apache Hadoop, which is a distributed computing framework for scalable Big Data processing. HSRA currently supports single-end and paired-end read alignments from FASTQ/FASTA datasets. Moreover, our tool uses the Hadoop Sequence Parser (HSP) library (link above) to efficiently read the input datasets stored on the Hadoop Distributed File System (HDFS), being able to process datasets compressed with Gzip and BZip2 codecs.

Executable program that measures sizes and other properties of colonies arrayed in a grid format (intended for 768, 384, or 96 colonies on agar plates) from jpeg images

The purpose of this program is to plot the waveforms of the hydrogen wave function. The program has 4 option's. First, plotting the radial function, second, plotting the radial probability, third, 2d wave function,last, 3d wave function.

HYDRA is an open-source, platform-neutral library for performing Markov Chain Monte Carlo. It implements the logic of standard MCMC samplers within a framework designed to be easy to use and to extend while allowing integration with other software to

HadStat is service on the cloud, allow you to analysis the data on the cloud and return the result in nice graph,this service is free, you can redistribute it and/or modify it under the terms of the GNU General Public License. this service using many technologies , like Hadoop mapreduce, HTML, PHP, Web Service applications, linux server, java, eclipse IDE, with many indicators:Simple moving average (SMA),Exponential moving average (EMA),Smoothed simple moving average (SMMA),Linear weighted moving average (LWMA )on DATA from NYSE daily prices.....

Java framework to easily implement optimization problems based on evolutionary algorithms or evolution strategies and execute them in Hadoop clusters.

HBM (hair bundle motility) is a numerical simulation software, intended to describe the activity of hair bundles that compose the mechano-sensitive organelle of the hair cells in the inner hear..

Android application that displays list of halachic/halakhic times for Jewish prayers (zmanim and zmanei tefillot).

Halef is an open source project aimed at building infrastructure of a VXML-based Spoken Dialog system. It is a combination of different Open Source tools such as Zanzibar, Cairo, JVXML, Sphinx, Festival, Mary and others.

HanNanum is a Korean Morphological Analyzer and POS Tagger. A plug-in component-based architecture is adapted to the new Java version for flexible use. You can find the work flow for morphological analysis, POS tagging, noun extraction, etc. Contact: kschoi@kaist.ac.kr hjjeong@world.kaist.ac.kr

The Hanalyzer is a tool designed to help biologists explain results observed in genome-scale experiments and to generate new hypotheses. It combines information extraction, semantic data integration, reasoning, and visualization.

Handwritten Signature SDK supports: dynamic time wrapping (DTW), extended regression (ER), signature sampling, direction hash and features extraction: see wiki for more info.

Hanghe is a marine navigator supporting BSB/KAP chart, GPS, multiple chart display, ship tracking. It is developed in Java 1.6.

HaploGeneMapper is a tool to visualise the genomic proximity of haploinsufficient genes to segmental duplications on a chromosome-by-chromosome basis.

The HarbourPower app is a Java application to communicate with and control a HarbourPower smart power source.

Dynamic visualization of Harmonic Functions: sin(kx-wt) and cos(kx-wt)

A user-space spatial addon for Derby and H2 databases.

Hawthorn provides a caching and lookup mechanism for bioinformatics ontology formats such as OBO and DAG.

High level 1-Wire API hiding the network protocol details from the API user

HealthCareSim is an SDK for rapid modeling and simulating care delivery systems using the discrete event simulation paradigm. A modular design and useful defaults will enable a Java developer to quickly build prototype models that can be extended.

The Health Manager Java SDK is an interface definition to connect wireless medical devices with a Java application. It includes also an implementation that simulates real devices and a sample application demonstrating the usage.

HealthAgents is an open source web-based distributed decision support system (DSS) which provides hospitals and organisations with a reliable tool to aid in the diagnosis of brain tumours and their prognosis aiming to avoid invasive surgical procedures

Heart (Hydrological and Environmental Analysis and Reporting Tool) is a raster-based GIS-like app for the analysis of hydrological parameters and the generation of associated reports.