Showing 981 open source projects for "project java"

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  • 1
    DCMLinux - Dicom Linux Distribution

    DCMLinux - Dicom Linux Distribution

    Dicom PACS solution for free.

    DCMLinux is a complete PACS system, free of charge. Its core is an Ubuntu 14.04 system fully updated and it contains the DCM4CHEE as its PACS server. In the near future it will contain many other addons such as Weasis, Oviyam, Care2x, etc. Just download the iso, burn it to a CD and boot it up. No need to configure any files of dcm4chee, DCMLinux installer asks for everything it needs to configure a running PACS in minutes. Project Wiki : http://wiki.dcmlinux.org Project Forums:...
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  • 2
    SILA

    SILA

    Automated bacterial and archaeal genome annotation system

    SILA is a system for automated annotation of bacterial and archaeal genomes. It provides accurate gene prediction using a combination of tools (Prodigal and HGF) and a web site for task management and visualization of annotation. This project is in alpha stage. Please use the online service available at: http://www.bioinfo.ufpr.br/SILA/login.jsp Documentation (portuguese only): http://hdl.handle.net/1884/34801
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  • 3
    This ohnlp project has released "pipelines" that were contributed by members of the OHNLP Consortium. The pipelines are based on the Apache UIMA framework. medKAT/P, MedCoref, MedTagger, MedXN, and cTAKES are licensed under Apache License V2.0. MedTime is licensed under GNU General Public License version 3.0 (GPLv3). cTAKES development has moved to apache.org. See http://ctakes.apache.org/
    Downloads: 1 This Week
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  • 4

    Bamformatics

    Toolkit and GUI for sequencing data analysis

    The Bamformatics project aims to provide a coherent and consistent approach to analysis of high-throughput sequencing data. Its toolkit includes, among others, programs to identify variants and to compute various types genomic tracks. It also provides a graphical user interface to facilitate general bioinformatic workflows. The project wiki contains further details.
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  • 5
    ImagingBook

    ImagingBook

    Java source code for image processing books by Burger & Burge

    NOTE: The source repository for this project has been moved to a NEW LOCATION: ************************************************************************************ https://github.com/imagingbook/imagingbook-public ************************************************************************************
    Downloads: 0 This Week
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  • 6
    Welsh Natural Language Toolkit

    Welsh Natural Language Toolkit

    WNLT is a suite of open source natural language modules for the Welsh

    ...The modules are written in JAVA and ‘wrapped’ for execution under the General Architecture for Text Engineering (GATE) framework. The project also includes CYMRIE an adapted version for Welsh of the GATE - ANNIE Named Entity Recognition (NER) application for a range of entities such as Persons, Organisations, Locations, and date and time expressions.
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  • 7
    CanReg5 (moved to Github)

    CanReg5 (moved to Github)

    Canreg5 is a software package for population based cancer registries

    Cancer registries need a tool to input, store, check and analyse their data. If these data are also coded and verified in a standard way, it facilitates the production of comparable analyses across registry populations. The main goal of the CanReg5 project is to provide a flexible and easy to use tool to accomplish these objectives. CanReg5 is a multi user, multi platform, open source tool to input, store, check and analyse cancer registry data. It has modules to do: data entry,...
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  • 8

    Pi-Space Physics Software

    A Physics Theory for Unifying Classical, Quantum and Relativistic Phys

    This is the Official Software of the Pi-Space Physics Theory created by Martin Brady. I have a B.Sc. in Computer Applications from Dublin City University and I have an interest in software implementation of Physics. The Theory includes a Quantum Theory of Gravity as well as a reworking of Classical versions of Newton's Formulas. The Theory is based on a set of Relativistic Diagrams called Pi-Space Diagrams for those new to the Theory. License :: Creative Commons Attribution...
    Downloads: 0 This Week
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  • 9
    Generic Model Organism Database Project
    GMOD is a set of interoperable open source software components for visualizing, annotating, and managing biological data. See http://gmod.org for more.
    Downloads: 5 This Week
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  • 10
    This project implements a Cytoscape plugin for viewing and manipulating pathway maps for metabolic models created by the Model SEED (http://www.theseed.org/models). See the "Files" area for README. See Project Homepage for Tutorial.
    Downloads: 0 This Week
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  • 11

    j2mod

    Enhanced Modbus library implemented in the Java programming language

    This is a fork of the jamod Modbus library, taken at version 1.2.1, released under the Apache 2 license, as contained in the SVN repository for that project. The goal of the j2mod project is to produce a more fully functioning Modbus(tm) communication library based on the Java programming language. It is the intention that this be an actively developed project, accepting submissions from professional software engineers with experience in Modbus Master and Slave development.
    Downloads: 4 This Week
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  • 12
    jAudio
    jAudio is a project implementing a number of common feature extraction algorithms for analyzing audio in java. Output is either in Weka's ARFF format or the ACE format. Can be used either as a GUI application, command-line application, or embedded. The primary repository is on github (dmcennis) which pushes to this projects github repository.
    Downloads: 1 This Week
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  • 13
    NiCE

    NiCE

    Modeling and Simulation made NiCE!

    Notice! This project is now the Eclipse Integrated Computational Environment (ICE)! The new project page is www.eclipse.org/ice and the updated source code is at www.github.com/eclipse/ice . Contact: billingsjj <at> ornl . gov The NEAMS Integrated Computational Environment (NiCE) facilitates the flexible development, composition and use of a wide range of simulations, models and analysis tools for NEAMS integrated performance and safety codes.
    Downloads: 0 This Week
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  • 14
    CSV Transformer

    CSV Transformer

    transforms xml to csv

    The CSV Transformer is a data processing tool which transforms .xml-Files to comma separated values. The CSV Transformer was created in a load and performance testing project, the use case was to be able to transform 2800 configuration files of a big banking application to a single .csv-File. With this single file it was possible to compare the whole configuration between two releases with the already available tool CSV Comparator. This enabled the team to verify if there were any...
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  • 15
    Eviewbox is a java imaging suite, its purpose is to view and spread native DICOM medical images and allowing for 2D reconstructions. EViewbox applet will allow to see the DICOM images on every platform.
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  • 16
    Analyze My Genes

    Analyze My Genes

    Compare gene analysis results from 23andme with the human genome

    This program compares personal gene analysis results from 23andme with extracted databases from the human genome project. An typical example of an extracted database is a dataset which contains all alternative alleles which occur less than 1% of the time.
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  • 17

    JMapViewer

    Java Swing component for integrating OSM maps into your Java app.

    This project offers the Mavenized format of the official "JMapViewer" project. Official project code on: https://trac.openstreetmap.org/browser/subversion/applications/viewer/jmapviewer?order=name Please, note that no development is performed in this SVN, just contains Maven artifact of official releases (starting from 1.14 version) If you want to give it a try, download code and run the Demo: > mvn compile package > cd target > java -jar JMapViewer-1.14.1-Demo.jar
    Downloads: 6 This Week
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  • 18
    The JTS Topology Suite is an API for modelling and manipulating 2-dimensional linear geometry. It provides numerous geometric predicates and functions. JTS conforms to the Simple Features Specification for SQL published by the Open GIS Consortium.
    Downloads: 12 This Week
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  • 19
    CRAFT HPC Floating-point Analysis

    CRAFT HPC Floating-point Analysis

    CRAFT: Configurable Runtime Analysis for Floating-point Tuning

    CRAFT (Configurable Runtime Analysis for Floating-point Tuning) for HPC (High-Performance Computing) uses binary instrumentation to perform runtime analysis of floating-point code, detecting cancellations and making precision level recommendations. NOTE: THIS PROJECT HAS MOVED TO GITHUB!!!! https://github.com/crafthpc/craft
    Downloads: 0 This Week
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  • 20
    OpenOrienteering

    OpenOrienteering

    Former project page

    See https://www.openorienteering.org/apps/mapper/
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    Downloads: 10 This Week
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  • 21
    Open XAL

    Open XAL

    Accelerator Physics Framework

    Open XAL is an open source development environment used for creating accelerator physics applications, scripts and services. This project is a collaboration among SNS, CSNS, ESS, GANIL, TRIUMF and FRIB.
    Downloads: 0 This Week
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  • 22
    openModeller is a complete C++ framework for species potential distribution modelling. The project also includes a graphical user interface, a web service interface and an API for Python.
    Downloads: 11 This Week
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  • 23

    physicsmata

    API for all possible cellular automata that work same at all angles

    Its strange how the "sorted pointers" normalizing makes just about any random function, as long as it connects the inputs to the outputs on some path, vibrate as some nonlinear shape of wave. This could be used as a game interface for evolvable musical instruments or fluid puzzle games. Physicsmata is similar in effect to SmoothLife but simpler and pure Java. The cellular automata API takes a function to run at each point. Its parameters are sums of screen brightness (n color dimensions are...
    Downloads: 0 This Week
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  • 24
    MyOscar is a personal health record system. This project contains both the data storage server as well as a client / patient UI for accessing the data. Other data access clients can be / have been written, the Oscar EMR is one such client. The sourceforge myoscar-users@lists.sourceforge.net is the main mail list and form of communications for this project. The sourceforge Tickets system is the bug and feature tracker for this project. The sourceforge git repository is not the...
    Downloads: 0 This Week
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  • 25
    Systems Biology Simulation Core Library

    Systems Biology Simulation Core Library

    Accurate and efficient Java library that simulates biological models

    This project has been moved to https://github.com/draeger-lab/SBSCL.
    Downloads: 0 This Week
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