CytoSEED:Cytoscape plugin for Model SEED download

This project implements a Cytoscape plugin for viewing and manipulating pathway maps for metabolic models created by the Model SEED (http://www.theseed.org/models). See the "Files" area for README. See Project Homepage for Tutorial.

Project Samples

Seed243273.1 (Mycoplasma genitalium G-37) Glycolysis Map

Seed243273.1 and Seed272634.1 after loading

Seed83333.1 (E. coli K-12) Maps Panel with Legend

Seed243273.1 (Mycoplasma genitalium G-37) after editing

Project Activity

See All Activity >

License

GNU General Public License version 2.0 (GPLv2)

Follow CytoSEED:Cytoscape plugin for Model SEED

CytoSEED:Cytoscape plugin for Model SEED Web Site

Other Useful Business Software

Demo Series - Small Business Backup By Veeam

Learn how to protect your Microsoft 365 data, with simple, actionable tips today.

Watch this on-demand demo series and learn how to protect your Microsoft 365 data with clear, simple, actionable steps that are easy to implement for businesses of all sizes.

Watch Demo Series

Rate This Project

User Reviews

Be the first to post a review of CytoSEED:Cytoscape plugin for Model SEED!

Additional Project Details

Operating Systems

Mac, Windows

Intended Audience

End Users/Desktop

User Interface

Plugins

Programming Language

Java

Related Categories

Java Bio-Informatics Software

Registered

2011-06-09

Similar Business Software

SnapGene

Accurately design and simulate cloning procedures. Test complicated projects, catch errors before they happen, and obtain the right constructs the first time. Cloning is easier when you can see what you are doing. The intuitive interface offers you unparalleled visibility into your work,...

See Software
OmnibusX

In the world of biological data science, navigating vast and complex datasets can be a daunting task. Our software toolkit is designed to empower you by accelerating analysis, promoting accessibility, and providing comprehensive visualization tools to help you make sense of these intricate...

See Software
Bioconductor

The Bioconductor project aims to develop and share open source software for precise and repeatable analysis of biological data. We foster an inclusive and collaborative community of developers and data scientists. Resources to maximize the potential of Bioconductor. From basic functionalities to...

See Software
GenomeBrowse

This free tool delivers stunning visualizations of your genomic data that give you the power to see what is occurring at each base pair in your samples. GenomeBrowse runs as a native desktop application on your computer. No longer do you have to sacrifice speed and interface quality to obtain a...

See Software
ROSALIND

Generate greater return on research and improve team productivity. Extend private and public data across teams with interactive data visualization. Rosalind is the only multi-tenant SaaS platform designed for scientists. Analyze, interpret, share, plan, validate, and generate new hypotheses....

See Software
Galaxy

Galaxy is an open source, web-based platform for data-intensive biomedical research. If you are new to Galaxy start here or consult our help resources. You can install your own Galaxy by following the tutorial and choosing from thousands of tools from the tool shed. This instance of Galaxy is...

See Software