Showing 322 open source projects for "mysql-bind"

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  • 1

    locusvu

    Tool for genomics;automates data retrieval from db;enables workflows

    LocusVu is a novel Java based software tool that accepts a list of genomic loci (positions on the chromosome) as input and automates fetching of related information (cytogenetic band, gene name, OMIM data etc.) from public databases such as the UCSC genome browser database. It then enables multiple workflows on the retrieved results, like comparing multiple datasets (comparative genomics), viewing neighboring genes for a loci from within the tool itself, or graphically representing these...
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  • 2
    Java Virtual Petrographic Microscope

    Java Virtual Petrographic Microscope

    A virtual petrographic microscope for geologists

    A free virtual petrographic microscope application which allows users to examine and explore minerals and rocks features. jVPM makes mineralogy to be easier to examine a thin section and to understand the characteristic properties for each mineral without a petrographic microscope, which is known to be very expensive. It is mainly addressed to students as a guide in individual or supervised laboratory work.
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  • 3

    BioDare

    BioDare is Biological Data Repository focused on timeseries data

    BioDare (Biological Data Repository) was developed under the multi-site ROBuST project (http://hallidaylab.bio.ed.ac.uk/ROBuST.html) to support data exchange inside the project. It is a web application which allows data-sharing (including public dissemination), data-processing and analysis, with the main focus on time-series data produced in circadian experiments. The main features of BioDare are: - an online repository for experimental data accompanied by extensive...
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  • 4

    BDcheckRelease

    Scrab book for checking releases

    A play ground to make sure I know how to use it before making the real release
    Downloads: 0 This Week
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  • 5
    Myrtle

    Myrtle

    A simple programmable spreadsheet for learning statistics.

    Myrtle is a simple programmable spreadsheet and statistical analysis software specifically designed for learning statistics. It provides the standard spreadsheet functionality one would expect like multiple tabbed sheets, relative and absolute row and column referencing in formulas, and a large catalog of built-in functions. Functions specific to logic and computer science, mathematics, probability, and statistics are available. Student's can easily create, customize, and update plots and...
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  • 6

    TML - Text Mining Library for LSA & CMM

    TML is a Java Library for LSA and extracting Concept Maps from text

    TML has moved to http://www.villalon.cl/tml.html and the code to https://github.com/villalon/tml
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  • 7

    javadbchem

    A universal chemistry database system, using Java and any rdbms

    This projects provides a mechanism which saves chemical structures to a rdbms. Everything is written in Java and is independent from the rdbms used (first tested system is mysql, tweaking might be needed for others). The chemistry is handled using Chemistry Development Kit, this is proven code. The system holds atoms and bonds as entities in the rdbms, this makes it possible to have properties recorded using foreign keys and referential integrity. Apache Torque is used for database access. The build system of the project makes it possible to add properties directly to the molecule/atom/bond tables. ...
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  • 8
    PARSEC - PAtteRn SEarch / Context

    PARSEC - PAtteRn SEarch / Context

    PARSEC - PAtteRn SEarch and Contextualization

    The characterization of genomic sites is a major challenge in the understanding and exploitation of next generation sequencing data. Most genomic sites are represented by short, degenerated motifs with a scattered distribution and sometimes with biological function (ex: regulation of gene expression, splicing patterns or epigenetics signals). These motifs are associated with a huge amount of noise and thus, the development of a computational platform for accurate detection of genomic sites...
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  • 9

    LIMS-A

    Laboratory Information Management System with Complete Lab. Automation

    Laboratory Information Management System with Complete Laboratory Automation. This Project is created by Fatih University Computer Engineering Students .. Hasan SARMAN Hamadou Doudoun Niangadou Feugang Kemegni Fabrice it helps to automate complete lab system. its originally created to use on a R&D lab. if you wish you can use it on every kind of labs. it comes with Client Server based Access control Mechanism which cordinate access control with registered projects.
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  • 10
    Onco-STS

    Onco-STS

    A web-based Laboratory Information Management System

    Onco-STS is a web-based Laboratory Information Management System for sample and analysis tracking in oncogenomic experiments. The systematic sequencing and analysis of tumour samples, as well other oncogenomic experiments, necessitates the tracking of relevant sample information throughout the investigative process. These meta-data of the sequencing and analysis procedures include information about the samples and projects as well as the sequencing centers, platforms, data locations,...
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  • 11
    JARep is a reporting tool for application performance data, extracted from a performance measuring tool like JAMon API. The data is then stored in a database. Via a webapp or a Swing application you can view the performance over time. See SVN source.
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  • 12
    PACS VM

    PACS VM

    ISO - Customized version of dcm4chee 2.17.3 for MySQL.

    1. Add JBoss Application Server 4.2.3.GA for JDK 6. 2. Cleanup for Windows and deprecated files. 3. Off CONSOLE records - http://forums.dcm4che.org/jiveforums/thread.jspa?messageID=4787
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  • 13
    Based on HL7 v.2.3.1 Orders & Results Reference Information Model (RIM)s, The project is NOT a CPOE per-se. Instead, the project provides "applications" that allow EHR's to perform Outpatient Orders and Results via HIE, and collect these into their EHRs to feed the EHR "CPOE module / section" (ex. with prescribed drugs, ordered labs and results, ....) The first module in the project was the "ePrescribing application"; certified by RxHub and SureScripts back in 2007. New...
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  • 14
    The Systems Biology Ontology project (SBO) goal is to develop controlled vocabularies and ontologies tailored specifically for the kinds of problems being faced in Systems Biology, especially in the context of computational modeling. !!!! Important Announcement !!!! We have moved the curation and development of Systems Biology Ontology (SBO) to a git-hub repository https://github.com/EBI-BioModels/SBO. Hence, this SourceForge SBO project has also been retired. Please use the Git-Hub...
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  • 15

    Math Simulator

    A simulation software for numerical techniques.

    Math Simulator is a java-based application which simulates various mathematical techniques.It is extremely useful for the Engineering students and for professionals. Most importantly, unlike most others Math Simulator is an Application rather than a java - library. So, user is not required to have any computer background. A Unique feature of Math Simulator is that it allows you to save queries for later reference. Hence you can save the problems along with their results.
    Downloads: 1 This Week
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  • 16
    BMDExpress is a bioinformatics tool used to analyze microarray dose-response data. The analysis provides benchmark dose estimates at which different cellular processes are altered in toxicogenomic experiments.
    Downloads: 0 This Week
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  • 17
    GriF (Grid Framework)
    GriF is a new JAVA Collaborative Grid Framework developed by COMPCHEM Virtual Organization operating in the EGI Production Grid environment aimed at running multi-purpose scientific applications empowering Grid massive calculations.
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  • 18
    openBmap

    openBmap

    a free and open map of wireless communicating objects

    openBmap collects data and provides open maps and statistics of all communicating objects: cellular antennas, wifi hotspots. All softwares from back-end to client are open-source under AGPL v3 license.
    Downloads: 1 This Week
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  • 19
    OpenGeoTracker
    Lets you monitor your GPS-phone. You have full control of your own data. Both client software (for phones) and server software is free open source, so you might set up your own server or use the default one at opengeotracker.org
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  • 20
    Screening Assistant 2
    ScreeningAssistant 2 is a modular software dedicated to perform various simple and advanced chemoinformatics analysis around chemical libraries.
    Downloads: 1 This Week
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  • 21
    GAMES ESMI

    GAMES ESMI

    The Energy Sensing and Monitoring Infrastructure of the GAMES project

    This is part of the GAMES Project, which consists of a set of innovative methodologies and Open Source ICT tools for designing and managing energy efficiency in IT Service Centres. The ESMI is the monitoring and sensing infrastructure which allows the fine-grained measurement and provides both an event-based and a real-time stream of data conveying information about the energy consumption in the key points of the overall system. It is completed by a set of Nagios plugin and an assessment...
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  • 22

    FullFiller

    Data Base Benchmarking tool

    A very simple tool to automate benchmarking tests on MySQL DBs. It fills MySQL tables columns; perform customized tests; and outputs the results on CSV format. It uses Xeger, a java package for generating random text from regular expressions (http://code.google.com/p/xeger/). Xeger uses dk.brics.automaton java package developed by Anders Møller (http://cs.au.dk/~amoeller/automaton/index.html).
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  • 23
    YANG J. (Yet Another Network Generator)
    YANG (Yet Another Network Generator - Java) enables you to generate social networks given various social rules observed in the real population. Uses: generate realistic networks to be used in individual-centric models, teaching or benchmarking.
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  • 24
    The Open Decision Makes enables you to find the best alternative for a defined goal with the AHP (Analytic Hierarchy Process) method.
    Downloads: 1 This Week
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  • 25

    ssSearchEngine

    keyword search engine for semi-structured data (Tables, lists,...)

    This application implement an approach for doing keyword based search over semi-structured data available in HTML pages.
    Downloads: 0 This Week
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