locusvu Icon

locusvu

Tool for genomics;automates data retrieval from db;enables workflows

Add a Review
0 Downloads (This Week)
Last Update:
Download LocusVu.tar.gz
Browse All Files
Linux

Screenshots

Description

LocusVu is a novel Java based software tool that accepts a list of genomic loci (positions on the chromosome) as input and automates fetching of related information (cytogenetic band, gene name, OMIM data etc.) from public databases such as the UCSC genome browser database. It then enables multiple workflows on the retrieved results, like comparing multiple datasets (comparative genomics), viewing neighboring genes for a loci from within the tool itself, or graphically representing these results in bar / pie charts. LocusVu has a simple easy-to-use GUI on the frontend which enables intuitive user interaction with the underlying logic.
The tool can be easily extended to add support for other databases (eg. Ensembl) or to fetch information
from other tables in the database. Thus, LocusVu provides a basic framework that can be used by users and developers alike in simplifying existing workflows and creating newer ones to support data analysis in genomics.

locusvu Web Site

Features

  • Automates data retrieval from databases (presently UCSC genome browser database)
  • Enables workflows on retrieved results like..
  • ..comparing multiple datasets (comparative genomics)
  • ..view neighboring genes for a locus (from within the tool itself)
  • ..graphically represent results (bar / pie charts)
  • Easy-to-use GUI on the frontend for intuitive usage
  • Logging with Log4j for easy debugging
  • Easily extensible

KEEP ME UPDATED

Other Useful Business Software

The Leading Provider of Business VoIP Phone Systems Icon

Award-Winning Business VoIP Phone System

The Leading Provider of Business VoIP Phone Systems Icon
1 of 5 2 of 5 3 of 5 4 of 5 5 of 5
62 Reviews
  • Unlimited Calling, Faxing, Video Conferencing
  • 24/7 U.S Based Customer Support
  • Super Reliable, Simple to Use
Write a Review

User Reviews

Be the first to post a review of locusvu!

Additional Project Details

Intended Audience

Science/Research, Developers

User Interface

Java Swing

Programming Language

Java

Registered

2012-07-10

Thanks for helping keep SourceForge clean.

Screenshot instructions:
Windows
Mac
Red Hat Linux   Ubuntu

Click URL instructions:
Right-click on ad, choose "Copy Link", then paste here →
(This may not be possible with some types of ads)

More information about our ad policies
X

Briefly describe the problem (required):

Upload screenshot of ad (required):
Select a file, or drag & drop file here.

Please provide the ad click URL, if possible:

Get latest updates about Open Source Projects, Conferences and News.

No, thanks