Showing 2849 open source projects for "gnu linux"

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  • 1
    com-hfg

    com-hfg

    java library for XML, HTML, or SVG generation + bioinformatics classes

    The com.hfg (hairyfatguy.com) library is a collection of utility classes that make it easy to construct XML, HTML, XHTML, or SVG in an object-oriented way from within your Java application or webapp. It also contains other IO utilities and bioinformatics classes for phylogenetic trees, taxonomy, and multi-chain proteins. Requires JDK1.8.
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  • 2
    JQM Java Quine McCluskey

    JQM Java Quine McCluskey

    JQM - Java Quine McCluskey for minimization of Boolean functions.

    Java Quine McCluskey (JQM) implements the Quine-McCluskey algorithm with Petrick’s Method for minimizing Boolean functions. Designed for both education and industrial application, it handles up to 16 variables and functions. Uniquely, JQM bridges the gap between theory and practice: it visualizes the solution process with generated Karnaugh Maps for students, while supporting PLC engineers by exporting results to Structured Text (ST) and Ladder Diagram (LD). The software includes a GUI for...
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  • 3
    JME (Java Math Expression)

    JME (Java Math Expression)

    Evaluador de expresiones matemáticas para Java en español

    Biblioteca para Java que implementa un potente evaluador matemático en español y un lenguaje estructurado de script, JMEScript, que hace uso de éste. Puede evaluar expresiones altamente complejas, que incluyen; * vectores * matrices * números complejos * números enteros y reales de precisión arbitraria, * expresiones booleanas * conjuntos * cadenas * diccionarios * grafos * correspondencias y relaciones finitas Permite especificar operaciones y funciones definidas por el...
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  • 4
    miRDeep*

    miRDeep*

    MiRDeep*

    Please cite: An, J., Lai, J., Lehman, M.L. and Nelson, C.C. (2013) miRDeep*: an integrated application tool for miRNA identification from RNA sequencing data. Nucleic Acids Res, 41, 727-737. We will create index for you if you tell us your interested species (j.an@qut.edu.au). download command line version "MDS_command_line_Vxx.zip" clicking "Browse All Files" please find miRPlant in sourceforge for plant miRNA prediction.
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  • 5
    A "gumbo" of tools and concepts supporting rich client applications with 2D/3D user interfaces. Expands on the code from the book "3D User Interfaces with Java 3D", and includes a generous contribution of RCP code from Meyer Sound. Recent work includes a Norden bombsight simulator, with terrain rendering based on NASA's WorldWind SDK. For this effort YourKit has generously made available its full-featured Java Profiler (https://www.yourkit.com/java/profiler/index.jsp), which has proved...
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  • 6
    Systems Biology Markup Language (SBML)

    Systems Biology Markup Language (SBML)

    A file format for exchanging computational models in systems biology

    The Systems Biology Markup Language (SBML) is an XML-based description language for representing computational models in systems biology. Visit the project web site to learn more.
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    Downloads: 11 This Week
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  • 7
    Ellogon is a multi-lingual, cross-platform, general-purpose language engineering environment.
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  • 8
    RobBX

    RobBX

    RobBX - is a powerfull DIY Arduino constructor based from IQBX

    RobBX - is a first in the world DIY Arduino constructor based from IQBX. Difference from prototype, RobBX has complete conception witch includes: a complete STL 3D-models with OpenSCAD sources; a special schemes and electronics connections; and powerfull Arduino firmware for ESP32 based on WiFi AP Server, connection to it from mobile device give a controller, programmable from IDE (on Blockly). Robb - is a low cost constructor, but it powerful for STEAM education.
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  • 9
    Manikin
    A very simple java simulation of the human body to simulate a 3D drawing manikin,with plenty of freedom of movements of the limbs and rotation of the body to implements a 360 degrees view.Source code available.No openGL.Improvements to come !
    Downloads: 7 This Week
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  • 10
    Java application for virtual tool shop simulation. Application allows simulation of exchange jobs between some tool shops. Jobs are grouped in projects and are organized in Petri nets (sequences of activities and stores).
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  • 11
    Open Visual Traceroute

    Open Visual Traceroute

    Open source cross-platform Java Visual Traceroute

    Open source cross-platform (Windows/Linux/Mac) Java Visual Traceroute. Data is displayed in a 3D or a 2D map component. What is a traceroute? http://en.wikipedia.org/wiki/Traceroute If you need some help, please first check http://visualtraceroute.net/ Feel free to drop by and leave a comment on the Facebook page https://www.facebook.com/openvisualtraceroute Enjoy and share! If you want to support the development of this project, you can make a Paypal contribution at...
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    Downloads: 571 This Week
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  • 12
    IF97

    IF97

    Water & steam properties Java library

    Steam tables for industrial use according to the international standard for the properties of water and steam, the IAPWS-IF97 formulation and the international standards for transport and other properties. Hummeling Engineering BV develops engineering software in the fields of thermodynamics, mechanics, hydrodynamics, and digital signal processing.
    Downloads: 2 This Week
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  • 13
    JSmol

    JSmol

    JavaScript-Based Molecular Viewer From Jmol

    JSmol is the extension of the Java-based molecular visualization applet Jmol (jmol.sourceforge.net) as an HTML5 JavaScript-only web app. It can be used in conjunction with the Java applet to provide an alternative to Java when the platform does not support that (iPhone/iPad) or does not support applets (Android). Used in conjunction with the Jmol JavaScript Object (http://wiki.jmol.org/index.php/Jmol_Javascript_Object), JSmol seamlessly offers alternatives to Java on these non-Applet...
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    Downloads: 20 This Week
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  • 14
    Symja Java Computer Algebra

    Symja Java Computer Algebra

    Symja - Java computer algebra language & symbolic math library

    Symja - computer algebra language and Java symbolic math library. Moved to https://github.com/axkr/symja_android_library. The Android App can be found at: https://github.com/axkr/symja-example
    Downloads: 20 This Week
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  • 15
    The Systems Biology Format Converter (SBFC) is a Java generic framework aiming to translate any systems biology model format into another. The SBFC Web Site providing detailed feature description and instructions for installing, using and developing new modules is: http://sbfc.sourceforge.net/ . Currently, SBFC allows the user to convert SBML models into the formats: BioPax, Matlab, Octave, XPP, DOT, and SBGN. Due to its modular design fast development and addition of new converters...
    Downloads: 14 This Week
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  • 16
    The RDP Classifier is a naive Bayesian classifier that can rapidly and accurately provides taxonomic assignments for bacterial and archaeal 16S rRNA sequences, fungal LSU and fungal ITS sequences, with confidence estimates for each assignment. More information and tutorials on how to install, use and retrain RDP Clasifier can be found on at https://github.com/rdpstaff/classifier and John Quensen's blog (https://john-quensen.com/). Citation: 1. Wang Q, Garrity GM, Tiedje JM, Cole JR....
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    Downloads: 57 This Week
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  • 17
    TXM

    TXM

    Unicode XML TEI text analysis platform

    TXM is a free and open-source cross-platform Unicode & XML based text analysis environment and graphical client, supporting Windows, Linux and Mac OS X. It can also be used online as a J2EE standard compliant web portal (GWT based) with access control built in. DOWNLOAD LATEST VERSION OF TXM : http://textometrie.ens-lyon.fr/spip.php?rubrique61&lang=en TXM offers a comprehensive range of analysis tools (concordances, collocate search, frequency lists, etc.) based on the powerfull CQP...
    Downloads: 8 This Week
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  • 18
    JAlma is Java Astronomical Almanac.
    Downloads: 0 This Week
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  • 19

    protoFrameworkMaryTTS

    The MaryTTS module for the protoFramework project

    The MaryTTS module for the protoFramework project. See https://sourceforge.net/projects/protoframework/ for the master project. This is a Dassault Aviation project
    Downloads: 0 This Week
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  • 20

    MANUELA

    Tool for assessment of environmental services on farm scale.

    The "MANUELA"-project is designed to enable farmers for the documentation of the environmental services provided by their holdings. Localization, description and evaluation of these services are joined within an open source Geographic Information System (OpenJUMP) and a PostgreSQL database.
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  • 21
    The Related Values Processing Framework helps the integration of Process Control Data Historian Systems.
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  • 22

    Dike-ED

    Simulator for medical emergency departments

    Discrete-event simulator for medical emergency department resource allocation.
    Downloads: 0 This Week
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  • 23

    polynomial-roots-calculation

    Application for calculating the real roots of a polynomial

    Application for polynomial roots calculation. The application does the job by supposing the roots of the derivative function are known. This way, we can delimit the range where each possible root is in, and by applying Bolzano's theorem, we can find the zeroes. It is not a very eficient way, as we must calculate al the derivatives of the polinomial, implying very high numbers (n!), that make the needed precision increase, making the computational complexity for high-degree polinomials...
    Downloads: 0 This Week
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  • 24
    TASSEL

    TASSEL

    TASSEL is a bioinformatics software package

    TASSEL is a bioinformatics software package that can analyze diversity for sequences, SNPs, or SSRs. Genotype/phenotype associations can be carried out by GLM or a mixed model. Estimates distance and linkage disequilibrium statistics.
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    Downloads: 13 This Week
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  • 25
    UMHDL

    UMHDL

    Integrated Development Environment (IDE) for learning HDL

    UMHDL is an educational Integrated Development Environment (IDE) intended for learning digital designing with programmable logic devices using Hardware Description Languages (HDL) through simulation. It is an open-source application created at the Miguel Hernández University (UMH). The aim for the UMHDL development was to have a graphical application that allows learning the VHDL language without licensing restrictions (using some existing open-source tools) and requiring few resources. So,...
    Downloads: 2 This Week
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