Search Results for "ekho-data" - Page 2
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Showing 1427 open source projects for "ekho-data"
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BBMap
BBMap short read aligner, and other bioinformatic tools.
...It is written in pure Java, can run on any platform, and has no dependencies other than Java being installed (compiled for Java 6 and higher). All tools are efficient and multithreaded. BBMap: Short read aligner for DNA and RNA-seq data. Capable of handling arbitrarily large genomes with millions of scaffolds. Handles Illumina, PacBio, 454, and other reads; very high sensitivity and tolerant of errors and numerous large indels. Very fast. BBNorm: Kmer-based error-correction and normalization tool. Dedupe: Simplifies assemblies by removing duplicate or contained subsequences that share a target percent identity. ... -
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Autoplot
Autoplot is an interactive browser for data on the web
Autoplot is an interactive browser for data on the web. Give Autoplot a URL or local file name and it creates a sensible plot of the data. Autoplot allows you to interactively browse data stored in ascii, .cdf, netcdf, and many other formats. Autoplot's source has been moved to GitHub. Thanks to SourceForge for many years of hosting! -
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Billiards Everything
The Great Periodic Path Hunt at gwtokarsky.github.io
Researchers, Mathematicians and Enthusiasts. Download "Billiards Everything" to discover new periodic billiard paths, an unresolved problem from 1775! Download "Billiards Covers" to see the most current list of periodic paths in triangles. Follow "The Great Periodic Path Hunt" at gwtokarsky.github.io for the latest news. Email tokarsky@ualberta.ca for feedback. -
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Grassroots DICOM
Cross-platform DICOM implementation
Grassroots DiCoM is a C++ library for DICOM medical files. It is accessible from Python, C#, Java and PHP. It supports RAW, JPEG, JPEG 2000, JPEG-LS, RLE and deflated transfer syntax. It comes with a super fast scanner implementation to quickly scan hundreds of DICOM files. It supports SCU network operations (C-ECHO, C-FIND, C-STORE, C-MOVE). PS 3.3 & 3.6 are distributed as XML files. It also provides PS 3.15 certificates and password based mecanism to anonymize and de-identify DICOM datasets. -
Stop Storing Third-Party Tokens in Your DatabaseRolling your own OAuth token storage can be a security liability. Token Vault securely stores access and refresh tokens from federated providers and handles exchange and renewal automatically. Connected accounts, refresh exchange, and privileged worker flows included.
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A web based Metadata Catalog Server for data description and discovery. Supports both generic and geospatial data discovery. It implements international standards (e.g. ISO19115/19139/19119, ISO19115-3, DCAT-AP, CSW 2.0, OGC API Records). It originates from the United Nations and is used by many governments as geoportal software. Active development and discussion takes place on GitHub and OSGeo Discourse.
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SCADA-LTS
A comprehensive Supervisory Control, Data Acquisition, and Execution
SCADA-LTS is an advanced FOSS, web-based, multi-platform environment designed to build your own Supervisory Control, Data Acquisition, and Execution ecosystem. Its architecture provides a robust foundation for complex industrial automation and monitoring. Optimized for Smart Infrastructure, it is highly capable of managing industrial PV/BESS, Smart buildings, municipal Water networks or Wastewater treatment, ANPR telemetry, City-wide lighting, and other diverse data administration workflows. ... -
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JPlotter
Plotter for math functions y=f(x)
JPlotter is an open source math plotter that can draw graphs of arbitrary mathematical functions. Some of the special features are plotting of the derivatives, area calculation, plotting of directional fields of differential equations and plotting of phase and amplitude graph of complex functions. -
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The Sashimi project hosts the Trans-Proteomic Pipeline (TPP), a mature suite of tools for mass-spec (MS, MS/MS) based proteomics: statistical validation, quantitation, visualization, and converters from raw MS data to the open mzML/mzXML formats.
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DODDLE-OWL
a Domain Ontology rapiD DeveLopment Environment – OWL extension
DODDLE-OWL is a domain ontology development tool for the Semantic Web. DODDLE-OWL makes reuse of existing ontologies and supports the semi-automatic construction of taxonomic and other relationships in domain ontologies from documents. -
Go From AI Idea to AI App FastAccess Gemini 3 and 200+ models. Build chatbots, agents, or custom models with built-in monitoring and scaling.
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OpenJUMP is a community driven fork of JUMP the "Java Unified Mapping Platform" GIS software. The original JUMP was developed by Vivid Solutions, released under GPL2 in 2003 and discontinued in 2006. During 2004 already some enthusiastic developers joined together to enhance further the features of JUMP. They launched an independent development branch called OpenJUMP. The name gives credit to the original JUMP development, and at the same time describes the objectives of this project to...
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OpenClinic GA
Open Source Integrated Hospital Information Management System
OpenClinic GA is an open source integrated hospital information management system covering management of administrative, financial, clinical, lab, x-ray, pharmacy, meals distribution and other data. Extensive statistical and reporting capabilities. OpenClinic GA and OpenClinic GMAO are owned by Frank Verbeke, MD, PhD at Post-Factum BV (https://www.post-factum.be) -
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mzMatch is a Java collection of small commandline tools specific for metabolomics MS data analysis. The tools are built on top of the PeakML core library, providing mass spectrometry specific functionality and access to the PeakML file format.
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TabuVis
An Interactive Visualisation for Tabular Data
TabuVis is a comprehensive visual analysis tool that provides a flexible, customizable and interactive visualization for tabular (or multidimensional) data. It utilizes scatter-plot visualization approach to provide comprehensive and interactive views for different attribute mappings. It provides single scatter-plot and multiple scatter-plots together with Map (GIS) capability. The project is available at: http://staff.scem.uws.edu.au/~vinh/projects/TabuVis/ Related publications: https://www.sciencedirect.com/science/article/pii/S2468502X20300358 https://dl.acm.org/doi/pdf/10.1145/2968220.2968248 https://link.springer.com/content/pdf/10.1007/s11432-013-4870-1.pdf https://dl.acm.org/doi/pdf/10.1145/2397696.2397705 -
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The Chemistry Development Kit (CDK) is a scientific, LGPL-ed library for bio- and cheminformatics and computational chemistry written in Java. The main home page of the CDK is now at: http://cdk.github.io
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AV3DNavigator
Um simples software de navegação 3D, desenvolvido em Java.
Um simples software de navegação 3D, desenvolvido em Java. -
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GOBU
Gene Browsing Utility
Gene Ontology Browsing Utility (hereinafter, GOBU, pronounced as "go-boo") is a browsing and manipulating tool for Post-Pipeline genetic data, especially useful for data with GO annotations. With help of GOBU, we expect biologists and their cooperating technicians can pay less effort on common programming stuff. At the same time, GOBU provides an Extendable Architecture which guarantees the possibility of 1. Arbitrary Data Description, 2. Data Integration, and 3. Extendable User Interface. -
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Billiards Covers
This zip jar contains the current coverings of periodic paths.
Researchers, Mathematicians and Enthusiasts. Download "Billiards Covers" to see the most current list of periodic paths in triangles. Download "Billiards Everything" to discover new periodic billiard paths, an unresolved problem from 1775! Follow "The Great Periodic Path Hunt" at gwtokarsky.github.io for the latest news. Email tokarsky@ualberta.ca for feedback. -
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GeoWebCache
GWC is a tile server and caching proxy written in Java
GeoWebCache is a WMS tile cache that lets you serve cached map data to WMS clients, Goole Earth, Google Maps and MS Virtual Earth. The system is pluggable on both ends and does automatic matching to the best available tile. It is very fast and scalable. -
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NGSEP
NGSEP (Next Generation Sequencing Experience Platform)
NGSEP is an integrated framework for analysis of short and long DNA high throughput sequencing reads. The current version provides functionalities for both de-novo and reference guided analysis of sequencing data, including genome assembly, read mapping, variants detection and genotyping and de-novo analysis of data generated from reduced representation protocols. NGSEP also provides modules for analysis of genomic variation databases (VCF files), including functional annotation, filtering, format conversion, comparison, clustering, imputation, introgression analysis and different kinds of statistics. ... -
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Library of Java code to interact with the data-recording formats (RPFITS and PSRFITS) used at the Australia Telescope National Facility (ATNF). It also provides tools for extracting metadata from the files for supply to Virtual Observatory instances.
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JDiskMark
Java Disk Benchmark Utility
JDiskMark is a powerful and versatile disk benchmarking tool written in Java, designed to help accurately measure the performance of your storage devices across different operating systems. Whether you're testing HDDs, SSDs, or network drives, JDiskMark provides reliable insights into your disk's read and write... -
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AMBIT:Chemical Structure DB&Web Service
Chemical structures database & machine learning with web services API
AMBIT offers a cheminformatics data management for chemical substances, structures and nanomaterials. Flexible structure, similarity and study queries storage, descriptor calculation and predictive models building via REST web services.User interface for creating read across assessment and generating reports, aligned with regulatory and industrial requirements. -
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Advanced Trigonometry Calculator
Precision Trigonometry: Advanced Calculator for Complex Math
Advanced Trigonometry Calculator is equipped with a user-friendly interface that allows for easy input of problems and instant computation. Professionals such as engineers who need to perform advanced trigonometric calculations in their work will find this tool extremely useful. ATC Online Alpha: https://advantrigoncalc.sourceforge.io/atc/ More info by clicking below: https://advantrigoncalc.sourceforge.io/ Advanced Trigonometry Calculator was only and always only developed by... -
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jCLS
The Component Library Sorcerer
WARNING: This project is under hard development and not intended for productive use yet but only for discussion. jCLS helps to create and maintain fine detailed component libraries for EDA tools like Altium Designer. It provides tools for data generation for masses of single parts from only the most necessary informations. Having good maintained and rich described and voluptuous detailed component libraries needs normally masses of time, work and discipline. jCLS comes here to save you from the molesting parts of this job. Feature in progress: -Some graphical improvements -Conceptual improvements -Some improvements in the file format Features added in next Release: -Built-in tutorial -Better libraries with library browser -Save and load libraries from a file -Export library data to csv files -Automatic Update Notification -
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A "gumbo" of tools and concepts supporting rich client applications with 2D/3D user interfaces. Expands on the code from the book "3D User Interfaces with Java 3D", and includes a generous contribution of RCP code from Meyer Sound. Recent work includes a Norden bombsight simulator, with terrain rendering based on NASA's WorldWind SDK. For this effort YourKit has generously made available its full-featured Java Profiler (https://www.yourkit.com/java/profiler/index.jsp), which has proved...
