Search Results for "fast"
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Showing 163 open source projects for "fast"
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kallisto
Near-optimal RNA-Seq quantification
...According to benchmarks done on a Mac desktop computer, kallisto can quantify 30 million human bulk RNA-seq reads in less than 3 minutes with just the read sequences and a transcriptome index, that in itself can take more than 10 minutes to build. And since it uses pseudoalignment, it is robust to errors in the reads and preserves the key information needed for quantification. This makes kallisto not only fast but highly accurate as well. In many benchmarks, it even greatly outperforms existing tools. -
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MuJoCo
Multi-Joint dynamics with Contact. A general purpose physics simulator
MuJoCo, developed and maintained by Google DeepMind, is a high-performance physics engine designed for simulating complex, articulated systems that interact through contact. It is widely used in research fields such as robotics, biomechanics, computer graphics, animation, and machine learning, where fast and accurate physics simulations are essential. The engine provides a robust C API optimized for real-time computation, making it suitable for scientific research and advanced simulation environments. MuJoCo’s core architecture is performance-tuned and utilizes preallocated data structures created through an XML-based compiler. The platform includes built-in interactive visualization using OpenGL and a native graphical interface for analyzing and testing simulations. ... -
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OpenGL Mathematics
Highly Optimized Graphics Math (glm) for C
Highly optimized 2D|3D math library, also known as OpenGL Mathematics (glm) for `C`. cglm provides lot of utils to help math operations to be fast and quick to write. It is community-friendly, feel free to bring any issues, bugs you faced. Almost all functions (inline versions) and parameters are documented inside the corresponding headers. OpenGL-related functions are dropped to make this lib platform/third-party independent. Make sure you have the latest version and feel free to report bugs, troubles. ... -
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LinAsm
Collection of fast and optimized assembly libraries for x86-64 Linux
LinAsm is collection of very fast and SIMD optimized assembly written libraries for x86-64 Linux. It implements many common and widely used algorithms for array manipulations: searching, sorting, arithmetic and vector operations, unit conversions; fast mathematical and statistic functions; numbers and time converting algorithms; finite impulse response (FIR) digital filters; spectrum analysis algorithms, Fast Hartley transformation; CPU cache friendly functions and extremely fast abstract data types (ADT) such as hash tables b-trees, and much more. ... -
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MathGL
A library for scientific data visualization
A free cross-platform library of fast C++ routines for the plotting of up to 3-ranged data. It can export to bitmap and vector EPS/SVG files. There are window interfaces (GLUT/FLTK/Qt) and console tools. MathGL can be used from C/Fortran/Python/Octav/Lua -
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Subread
High-performance read alignment, quantification and mutation discovery
...For the mapping of RNA-seq reads, Subread performs local alignments and Subjunc performs global alignments. Subread and Subjunc were published in the following paper: Yang Liao, Gordon K Smyth and Wei Shi. "The Subread aligner: fast, accurate and scalable read mapping by seed-and-vote", Nucleic Acids Research, 2013, 41(10):e108 -
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rw
rw calculates rank-width and rank-decompositions.
...It is based on ideas from "Computing rank-width exactly" by Sang-il Oum, "Sopra una formula numerica" by Ernesto Pascal, "Generation of a Vector from the Lexicographical Index" by B.P. Buckles and M. Lybanon and "Fast additions on masked integers" by Michael D. Adams and David S. Wise. On 2009's computers it works quite well up to graph sizes of about 28 nodes. Runtime and memory usage are exponential in the graph size. -
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luscus
molecular editor and viewer
Luscus is the program for graphical display and editing of molecular systems. The program allows fast and easy building and/or editing different molecular structures, up to several thousands of atoms large. Luscus can also visualize dipole moments, normal modes, molecular orbitals, electron densities and electrostatic potentials. In addition, simple geometrical objects can be rendered in order to point out a geometrical feature or a physical quantity. -
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newRPL
The classic RPL programming language reimplemented and reimagined.
This project reimplements from scratch the RPL language made popular by HP programmable calculators, in portable C/C++. The main goal is to release a complete computing environment for various targets. There's currently 4 active targets: the HP 50g, HP39gs and HP40gs calculators and a PC simulator (see the downloads section!). Other ports are planned for the future. -
Build Agents and Models on One PlatformGemini Enterprise Agent Platform is Google Cloud's comprehensive platform for developers to build, scale, govern, and optimize agents and models. Choose from Google's most advanced models and third-party models like Anthropic's Claude Model Family.
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libadb
Astronomical Database
libadb is an astronomical catalog management library desgined to provide fast access to astronomical object data. -
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Graph Plotter
GP is a tool to analyse numerical data
GP is aimed to be simple and fast tool to analyse numerical data. It does not claim to replace all other plotters. -
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42
Simulation for spacecraft attitude control system analysis and design
42 is a comprehensive general-purpose simulation of spacecraft attitude and orbit dynamics. Its primary purpose is to support design and validation of attitude control systems, from concept studies through integration and test. 42 accurately models multi-body spacecraft attitude dynamics (with rigid and/or flexible bodies), and both two-body and three-body orbital flight regimes, modelling environments from low Earth orbit to throughout the solar system. 42 simulates multiple spacecraft... -
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SAGECAL
GPU/MIC accelerated radio interferometric calibration program
SAGECal is a very fast, memory efficient and GPU accelerated radio interferometric calibration program. It can handle all source models including points, Gaussians and Shapelets. It can calibrate along hundreds of directions without running out of memory in almost real time. Intel Xeon Phi acceleration is also available. Distributed calibration using MPI and consensus optimization is enabled. -
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FFTW++ is a C++ header class for the FFTW Fast Fourier Transform library that automates memory allocation, alignment, planning, wisdom, and communication on both serial and parallel (OpenMP/MPI) architectures. In 2D and 3D, hybrid dealiasing of convolutions substantially reduces memory usage and computation time. Wrappers for C, Python, and Fortran are included.
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http://loto.sourceforge.net/ hosts 4 projects of free software related to materials science and physics. They are loto, feram, compasses and xtalgrowth.
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Advanced Trigonometry Calculator
Precision Trigonometry: Advanced Calculator for Complex Math
Advanced Trigonometry Calculator is equipped with a user-friendly interface that allows for easy input of problems and instant computation. Professionals such as engineers who need to perform advanced trigonometric calculations in their work will find this tool extremely useful. ATC Online Alpha: https://advantrigoncalc.sourceforge.io/atc/ More info by clicking below: https://advantrigoncalc.sourceforge.io/ Advanced Trigonometry Calculator was only and always only developed by... -
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libsombrero
Astronomical object/structure detection from 1D and 2D data sets.
Sombrero is a fast wavelet image processing and object detection C library for astronomical images. Sombrero is named after the "Mexican Hat" shape of the wavelet masks used in image convolution and is released under the GNU LGPL library. -
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headsort
headsort: streaming sort + 2x faster than gnu sort
headsort sorts files by line and fields. Options can pick field order and etc. In general headsort can sort in 1/2 the time sort(1) (mergesort) does in situations involving either pipes or mult column selection; less than 1/2 with both. Best case was about opposite that of sort(1)*. NEW* hsort main algorithm speed improvement (applies to all; 27,29,31). Now faster than sort(1) (in all cases tested). Using triangulation, hsort begins piped sorted output when 1st bin is done. ... -
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DNP3 Protocol Win Linux test tool code
DNP3 Outstation and client simulator, Source code Library, win, Linux
DNP3 Protocol - v21.06.018 Complete implementation of DNP3 protocol standard including File transfer. Binary Input, Double-bit Binary Input, Binary Output, Counter Input, Analog Input, Analog output, Octect String, virtual terminal String. support CROB, analog output command with "select-before-operate" or "direct-execute" command execution modes Industry proven, tested with all leading test tools. DNP3 Protocol RTU Outstation Server Simulator, Client Master Simulator,... -
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IEC 60870-5 101 Protocol Win C#
IEC 60870-5-101 Source code Library Stack - Windows c, c++, c# .net
v21,06.018 The complete implementation of IEC 101 protocol stack including File Transfer-Monitor, Balanced and Unbalanced mode, Directory Commands, Supports all type of Monitoring, command, parameter ASDUs. IEC 101 Windows SDK contains Win DLL (precompiled library), Static link lib, Demo IEC101 Server & Client programs, Visual Studio Demo console project files, Doxygen . We used Visual studio compiler to create the dll, sample test projects. FreyrSCADA offering 1) IEC101... -
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Faum
Fast Autonomous Unsupervised Multidimiensional Classification
This is the proof-of-concept implementation of the FAUM Clustering method. This implementation was used to perform the published results and is now released in the hope that it will be useful. -
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SimpleDCS is a Distributed Control System made easy - fully configurable both on hardware and a software level. Experimental stage (alpha)
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libdspl-2.0
libdspl-2.0 is opensource cross-platform digital signal processing alg
libdspl-2.0 — opensource cross-platform digital signal processing algorithm library, written in C language. Distributed under LGPL v3 license. This allows to use this library in all applications with dynamic linking. -
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GSvit
Fast FDTD solver with graphics card support
Fast FDTD solver with graphics card support. Optimized for nanoscale optics - scanning near field optical microscopy, rough surface scattering and solar cells. Uses CUDA environment for graphics card operation. -
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SHA256-in-C
SHA-256 Algorithm Implementation in C
