Search Results for "scientific plotting"
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Showing 225 open source projects for "scientific plotting"
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Scientific Visualization
An open access book on scientific visualization using python
The Scientific Visualization book is a freely available open-access textbook that introduces how to produce effective scientific visualizations using Python, focusing especially on leveraging the popular plotting library Matplotlib (and related tools). It goes beyond simple plotting tutorials and emphasizes design principles: how to choose colors, layout subplots, annotate graphs, and present data in a way that is both accurate and visually compelling. ... -
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UnicodePlots
Unicode-based scientific plotting for working in the terminal
Unicode-based scientific plotting for working in the terminal. -
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PyVista
3D plotting and mesh analysis through a streamlined interface
...This module can be used for scientific plotting for presentations and research papers as well as a supporting module for other mesh-dependent Python modules. Easily integrate with NumPy and create a variety of geometries and plot them. You could use any geometry to create your glyphs, or even plot the points directly. Direct access to mesh analysis and transformation routines. -
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Science Plots
Matplotlib styles for scientific plotting
Matplotlib styles for scientific figures. This repo has Matplotlib styles to format your figures for scientific papers, presentations, and theses. -
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CausalImpact
An R package for causal inference in time series
The CausalImpact repository houses an R package that implements causal inference in time series using Bayesian structural time series models. Its goal is to estimate the effect of an intervention (e.g. a marketing campaign, policy change) on a time series outcome by predicting what would have happened in a counterfactual “no intervention” world. The package requires as input a response time series plus one or more control (covariate) time series that are assumed unaffected by the... -
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webgl-plot
A high-Performance real-time 2D plotting library based on native WebGL
webgl-plot is a high-performance plotting library for real-time data visualization in the browser using WebGL. Unlike traditional canvas or SVG-based charting libraries, webgl-plot is optimized for streaming and dynamic updates, making it ideal for oscilloscope-style data, biomedical signals, or any application where data updates hundreds of times per second. Its minimal memory footprint and GPU acceleration ensure excellent performance even with tens of thousands of data points, and its... -
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IJulia.jl
Julia kernel for Jupyter
IJulia is a Julia-language backend (kernel) for Jupyter notebooks, allowing users to write and execute Julia code interactively in browser-based notebooks. It integrates seamlessly with Jupyter’s ecosystem, supporting markdown, plotting, multimedia, and inline output. IJulia is ideal for scientific computing, data analysis, and education, combining the power of Julia with the interactive capabilities of Jupyter. -
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SymPy
A computer algebra system written in pure Python
SymPy is an open source Python library for symbolic mathematics. Its goal is to become a full-featured computer algebra system (CAS) while maintaining the simplicity of its code. Written entirely in Python, SymPy is easy to use, comprehensible and easily extensible. It’s also very lightweight as it solely depends on mpmath, a pure Python library for arbitrary floating point arithmetic. SymPy has participated in every Google Summer of Code since 2007 and because of this has continuously... -
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broom
Convert statistical analysis objects from R into tidy format
broom is part of the tidymodels ecosystem that converts statistical model outputs (e.g. from lm, glm, t.test, lme4, etc.) into tidy tibbles — standardized data frames — using functions tidy(), glance(), and augment(). These are easier to manipulate, visualize, and report programmatically. -
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LIFELINES
Survival analysis in Python
...The library includes estimators such as Kaplan-Meier, Nelson-Aalen, and regression-based survival models. It is designed to be accessible to Python users and works well with common scientific computing workflows. Built-in plotting methods and datasets help users explore survival curves and compare groups visually. It is a practical tool for analysts, researchers, and data scientists who need event-time modeling without leaving Python. -
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VisPy
Main repository for Vispy
Vispy is an open-source, high-performance interactive visualization library in Python, designed for creating scientific visualizations and interactive plots. It leverages the power of modern Graphics Processing Units (GPUs) through OpenGL to render large datasets efficiently. Vispy supports a wide range of visualization types, including 2D plots, 3D visualizations, volume rendering, and more, making it suitable for scientific research, data analysis, and educational purposes. -
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awesome-single-cell
Community-curated list of software packages and data resources
Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc. List of software packages (and the people developing these methods) for single-cell data analysis, including RNA-seq, ATAC-seq, etc. Rapid, accurate and memory-frugal preprocessing of single-cell and single-nucleus RNA-seq data. Find bimodal, unimodal, and multimodal features in your data. Ascend is an R package comprised of fast, streamlined analysis functions optimized to... -
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Matplot++
Matplot++: A C++ Graphics Library for Data Visualization
...Matplot++ is a graphics library for data visualization that provides interactive plotting, means for exporting plots in high-quality formats for scientific publications, a compact syntax consistent with similar libraries, dozens of plot categories with specialized algorithms, multiple coding styles, and supports generic backends. -
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Vedo
A python module for scientific analysis of 3D data
A lightweight and powerful python module for scientific analysis and visualization of 3d objects. Inspired by the vpython manifesto "3D programming for ordinary mortals", vedo makes it easy to work with 3D pointclouds, meshes and volumes, in just a few lines of code, even for less experienced programmers. vedo is based on VTK and numpy, with no other dependencies. Import meshes from VTK format, STL, Wavefront OBJ, 3DS, Dolfin-XML, Neutral, GMSH, OFF, PCD (PointCloud). Export meshes as ASCII... -
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Altaxo Data Processing/Plotting Program
Data manipulation and plotting program with scripting
Altaxo is a data manipulation and plotting program written in C# for MS.NET. It is featuring worksheet views and plot views, a scripting language (currently C#) for data processing and automation, import of data from ASCII files or from images, export of graphs and embedding of graphs in other documents. -
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gnuplot
A portable, multi-platform, command-line driven graphing utility
A famous scientific plotting package, features include 2D and 3D plotting, a huge number of output formats, interactive input or script-driven options, and a large set of scripted examples. -
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PRML
PRML algorithms implemented in Python
PRML repository is a respected and well-maintained project that implements the foundational algorithms from the famous textbook Pattern Recognition and Machine Learning by Christopher M. Bishop, providing a practical and accessible Python reference for both students and professionals. Rather than just summarizing concepts, the repository includes working code that demonstrates linear regression and classification, kernel methods, neural networks, graphical models, mixture models with EM... -
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The Julia Programming Language
High-level, high-performance dynamic language for technical computing
Julia is a fast, open source high-performance dynamic language for technical computing. It can be used for data visualization and plotting, deep learning, machine learning, scientific computing, parallel computing and so much more. Having a high level syntax, Julia is easy to use for programmers of every level and background. Julia has more than 2,800 community-registered packages including various mathematical libraries, data manipulation tools, and packages for general purpose computing. ... -
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JPlotter
Plotter for math functions y=f(x)
JPlotter is an open source math plotter that can draw graphs of arbitrary mathematical functions. Some of the special features are plotting of the derivatives, area calculation, plotting of directional fields of differential equations and plotting of phase and amplitude graph of complex functions. -
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MathGL
A library for scientific data visualization
A free cross-platform library of fast C++ routines for the plotting of up to 3-ranged data. It can export to bitmap and vector EPS/SVG files. There are window interfaces (GLUT/FLTK/Qt) and console tools. MathGL can be used from C/Fortran/Python/Octav/Lua -
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GromacsProSuite
Graphical User Interface for Gromacs
This tool is an integrated graphical interface that simplifies molecular dynamics simulations using Gromacs. It provides a structured, tab-based environment to set up, execute, and analyze simulations data without complex command-line operations. The software automates tasks such as topology generation, solvation, ion addition, minimization, equilibration, and production runs while executing GROMACS commands in the background. Built-in monitoring tracks CPU, RAM, and disk usage to ensure... -
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PLplot
Cross-platform, scientific graphics plotting library
PLplot is a cross-platform, scientific graphics plotting library that supports math symbols and human languages (via UTF-8 user input strings); plot capabilities for multiple non-interactive plot file formats and in multiple interactive environments; and bindings for multiple computer languages. -
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Tellurium
Model, simulate, and analyze biochemical systems using one tool.
Tellurium (te.) is a Python environment supporting Spyder2 IDE and Jupyter Notebook aimed for large-scale systems and synthetic biology simulation. It combines a number of existing libraries, including libSBML, libRoadRunner (including libStruct), libAntimony, and is extensible via tePlugins. In addition other tools kits such as matplotlib and NumPy are used to provide additional analysis and plotting support. -
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AtomProbeLab
Matlab-based analysis of Atom Probe Data
A collection of scripts and functions for the analysis of atom probe tomography data. Currently, this includes: standard file operations, plotting mass spectra, mass spectra analysis and mass peak overlap solving. For more information see the Wiki: https://sourceforge.net/p/atomprobelab/wiki/Home/ Quick overview video: https://youtu.be/8rJHce7M5UU More in-depth video using the APT school demos live script: https://www.youtube.com/watch?v=cyrLHCzZwuw For details of the maximum... -
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Maxima -- GPL CAS based on DOE-MACSYMA
Computer Algebra System written in Common Lisp
Maxima is a computer algebra system comparable to commercial systems like Mathematica and Maple. It emphasizes symbolic mathematical computation: algebra, trigonometry, calculus, and much more. For example, Maxima solves x^2-r*x-s^2-r*s=0, giving the symbolic results [x=r+s, x=-s]. It can also calculate with exact integers and fractions, native floating-point, and high-precision big floats. Maxima has user-friendly front-ends, an online manual, plotting commands, and numerical...
