Search Results for "data entry program"
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Showing 76 open source projects for "data entry program"
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kallisto
Near-optimal RNA-Seq quantification
kallisto is a program for near-optimal quantification of transcript abundances from RNA-Seq data, or more generally of target sequences using high-throughput sequencing reads. It is based on the idea of using pseudoalignment to quickly determine reads and targets’ compatibility, with no need for alignment. According to benchmarks done on a Mac desktop computer, kallisto can quantify 30 million human bulk RNA-seq reads in less than 3 minutes with just the read sequences and a transcriptome index, that in itself can take more than 10 minutes to build. ... -
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Viking GPS data editor and analyzer
Viking is a free/open source program to manage GPS data
Viking is a free/open source program to manage GPS data. You can import, plot and create tracks, routes and waypoints, show OSM, Bing Aerial and other maps, geotag images, create routes using OSRM, see real-time GPS position (not in Windows), make maps using Mapnik (not in Windows), control items, etc. It is written in mostly in C (with some C++) & the GTK+3 toolkit. -
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luscus
molecular editor and viewer
Luscus is the program for graphical display and editing of molecular systems. The program allows fast and easy building and/or editing different molecular structures, up to several thousands of atoms large. Luscus can also visualize dipole moments, normal modes, molecular orbitals, electron densities and electrostatic potentials. In addition, simple geometrical objects can be rendered in order to point out a geometrical feature or a physical quantity. The program is developed as a graphical... -
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BioXTAS RAW
Processing and analysis of Small Angle X-ray Scattering (SAXS) data.
BioXTAS RAW is a program for analysis of Small-Angle X-ray Scattering (SAXS) data. The software enables: creation of 1D scattering profiles from 2D detector images, standard data operations such as averaging and subtraction, analysis of radius of gyration (Rg) and molecular weight, and advanced analysis using GNOM and DAMMIF as well as electron density reconstructions using DENSS. -
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Subread
High-performance read alignment, quantification and mutation discovery
The Subread software package is a tool kit for processing next-gen sequencing data. It includes Subread aligner, Subjunc exon-exon junction detector and featureCounts read summarization program. Subread aligner can be used to align both gDNA-seq and RNA-seq reads. Subjunc aligner was specified designed for the detection of exon-exon junction. For the mapping of RNA-seq reads, Subread performs local alignments and Subjunc performs global alignments. -
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SAGECAL
GPU/MIC accelerated radio interferometric calibration program
SAGECal is a very fast, memory efficient and GPU accelerated radio interferometric calibration program. It can handle all source models including points, Gaussians and Shapelets. It can calibrate along hundreds of directions without running out of memory in almost real time. Intel Xeon Phi acceleration is also available. Distributed calibration using MPI and consensus optimization is enabled. Also tools to build/restore sky models are included. -
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WP 34s
Scientific/engineering firmware repurposing HP business calculators!
This project has created scientific firmware for the HP-20b and HP-30b business calculators. WP 34S turns either of these calculators into a powerful keystroke programmable scientific device. According to our customers, it's the most powerful and fastest RPN scientific pocket calculator ever built. WP 34S is alive and stable since 2011. We have succeeded in satisfying the most picky users - read about their experiences on http://www.hpmuseum.org/forum/forum-8.html. Since 2014, WP... -
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Charmol
Program for molecular graphics
Charmol is a cross-platform GUI/command-line based program for making high-quality pictures of molecular structures, nowadays working on Linux, MacOS and Windows. As output, it produces POV-Ray rendered images or files in VRML format. Charmol is capable of making pictures containing: - from small- to large-size molecules - more molecules together (different settings possible) - orbitals using molden and fchk files (GTO functions up to 'h' angular momentum supported) -... -
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igspread
converts between IGES file and text file
Command-line interface program that converts between IGES file and text file. IGES files are compatible with most of CAD systems. This program permits you to convert curves and points created in CAD program into coordinates in text file or you can do the opposite - convert text files into curves. It is especially suitable for curves described by hundreds of coordinates, e.g. airfoil contours of aircraft wings. Output filename is either out.txt or out.igs. -
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Xdvi is a program for displaying DVI files on the X window system. Xdvik is a variant with hyperlink support and other additions, deployed e.g. in the TeX Live distribution.
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bruread is a program to read and display NMR data in the Bruker XWIN-NMR format. The program has a command-line interface and a graphic display based on gnuplot. - Note that this is only an NMR spectrum *viewer*, not a full-fledged data evaluation suite
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MSGraph is a program designed for the interactive, fast, qualitative analysis of mass spectrometric (MS) data. It is a tool to provide fast and simple access to all the information contained in an LC/MS analysis run.
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cdfread is a program for people wirking with mass spectrometry datasets. cdfread implements the routines to read mass spectra and mass chromatograms from data files in netCDF ("Andi-MS") format. Centroid and profile data are supported.
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gml4gtk
small console GML or graphviz DOT graph viewer
directed graph layout program for GML (Graph-Markup-Language) graph or partial graphviz DOT graph -
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ccplot
CloudSat and CALIPSO plotting tool
ccplot is an open source command-line program for plotting profile, layer and earth view data sets from CloudSat, CALIPSO and Aqua MODIS products. -
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ebfformat
An Efficient Binary data Format
...It is also designed to simplify the programming of input output routines in different programming languages. In a nutshell an EBF file is a collection of data objects. Each data object is specified by a unique name and a single file can have multiple data objects. Each data object is preceded by a meta-data or header which describes the binary data associated with it. Among other things, this header allows the files to be portable across systems with different endianess. -
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haikuVM
A Java VM for ARDUINO and other micros using the leJOS runtime.
HaikuVM has been started for hobbyists who develop applications for ARDUINO to open the world of JAVA and leJOS. Yes, you can program an ARDUINO with JAVA! HaikuVM is so small that it even runs on an atmega8 (and the ASURO robot). And yes, you can program an ASURO robot with JAVA! And since version 1.4.0 the RCX lego brick. -
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rawi2ctool
RAW I2C command line tool for debug, test and more
This is a Linux command line tool to do raw I2C accesses to a bus, IF SUPPORTED BY THE ADAPTER, to probe the bus, read or write some data, detect glitches, do a bench, program an EEPROM with the required blocksize, test the I2C bus driver, ... Raw I2C mode enables data frames that are not supported by SMBus and related tools (such as i2cget, i2cset, i2cdump) -
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8 Sounds USB
Summary
XMOS based, USB2 audio card, low power consumption, small form factor, 8 synchronous input channels and 4 stereo output channels. -
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TILP - TI Linking Program
TI graphing calculators <-> computer communication software
TILP (formerly GtkTiLink) can transfer data between Texas Instruments graphing calculators and a computer. It works with all link cables (parallel, serial, Black/Gray/Silver/Direct Link) and it supports the TI-Z80 series (73..86), the TI-eZ80 series (83PCE, 84+CE), the TI-68k series (89, 92, 92+, V200, 89T) and the Nspire series (Nspire Clickpad / Touchpad / CX, both CAS and non-CAS). The project is now managed on Github, https://github.com/debrouxl/tilp_and_gfm . It uses the libti*... -
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experix laboratory control system
instrument control, data acquisition display and analysis
Experix is a command-line driven environment for laboratory data acquisition and device control and graphical presentation and analysis of data. Written in C for GNU-Linux . Tested on PC and Raspberry Pi. The core is written very generally in order to support applications by means of script files. Device interfaces: PCMCIA daq (2 devices tested) via kernel module with interrupt handler and memory-mapped data; USB daq (1 device tested) using libusbx; running an equipment servicing program via pipes. ... -
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XASTIR
Multiplatform Ham Radio APRS and Mapping Program
NOTE: Code commits are FROZEN on SourceForge: New code is now at <http://github.com/Xastir/Xastir>. Real-time tracking & messaging of stations via radio/internet APRS data streams, w/125 map formats supported. Linux/FreeBSD/Solaris/MacOSX/Windows in any of 7 languages. Can also be used for mobile mapping w/GPS. MAILING LISTS ARE AT: PROJECT->WEB SITE. -
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olego
OLego – short or long RNA-seq read mapping to discover exon junction
...It is implemented in C++ with full support of multiple threading, to allow fast processing of large-scale data. -
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TinkerCell is a software for synthetic biology. The visual interface allows users to design networks using various biological "parts". Models can include modules and multiple cells. Users can program new functions using C or Python. www.tinkercell.
