Search Results for "error"
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54 projects for "error" with 2 filters applied:
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Gemini 3 and 200+ AI Models on One PlatformBuild generative AI apps with Vertex AI. Switch between models without switching platforms.
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BBMap
BBMap short read aligner, and other bioinformatic tools.
...Capable of handling arbitrarily large genomes with millions of scaffolds. Handles Illumina, PacBio, 454, and other reads; very high sensitivity and tolerant of errors and numerous large indels. Very fast. BBNorm: Kmer-based error-correction and normalization tool. Dedupe: Simplifies assemblies by removing duplicate or contained subsequences that share a target percent identity. Reformat: Reformats reads between fasta/fastq/scarf/fasta+qual/sam, interleaved/paired, and ASCII-33/64, at over 500 MB/s. BBDuk: Filters, trims, or masks reads with kmer matches to an artifact/contaminant file. ...and more! -
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A web based Metadata Catalog Server for data description and discovery. Supports both generic and geospatial data discovery. It implements international standards (e.g. ISO19115/19139/19119, ISO19115-3, DCAT-AP, CSW 2.0, OGC API Records). It originates from the United Nations and is used by many governments as geoportal software. Active development and discussion takes place on GitHub and OSGeo Discourse. You can also connect directly with the companies supporting the...
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A header file (cexcept.h) that provides Try/Throw/Catch macros similar to those available in C++ for error handling.
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PUMA Repository
Pascal Units for Medical Applications
The PUMA Repository is a collection of Pascal units for medical informatics. It contains reusable source code for a wide field of health-care application development. The code includes a support engine for the European Data Format (EDF and EDF+), converting functions for units of measurement and an HL7 engine. PUMA is compatible with Lazarus and Free Pascal. Some of the units also support other Pascal implementations including Delphi, winsoft Pocket Studio and other compilers. -
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NaveGo
NaveGo: an open source MATLAB/GNU Octave toolbox for processing integr
NaveGo is an open source MATLAB/GNU Octave toolbox designed for processing integrated navigation systems, simulating inertial sensors and GNSS receivers, and profiling inertial sensors using methods like Allan variance—providing a community-driven simulation framework for navigation system design and analysis. I am reaching out to share an important update regarding the NaveGo project. Due to a shift in both my professional career and personal interests away from navigation systems, I have... -
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misc genomics tools
Various scripts used in sequencing, annotation and RNAseq analysis
This is a collection of various programs developed in the course of a genomics project, involving the Pseudomonas strain NCIMB10586 These include * identifying and correcting errors in an (eg) pacbio genome sequence using illumina reads * prokaryotic sequence/genome annotation * RNAseq analysis - normalisation and collation of multiple samples as a group * RNAseq visualisation All scripts are provided on a 'best efforts' basis, however due to various system changes I do not... -
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Celestial Precomputation
Sight Reduction for Air Navigation with Python
Warning: I found an error if the DR position is on the southern hemisphere. The PUB249 pdf files did not show this error and are correct (as far as I checked). All Revisions 8+ and the Windows release have been fixed. This Python TK application calculates a good set of stars for a 3 star fix, makes all calculations similar to the FAAs Celestial Computation Sheet (see FAA doc FAA-H-8083-18). -
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...MIRA - Sequence assembler and sequence mapping for whole genome shotgun and EST / RNASeq sequencing data. Can use Sanger, 454, Illumina and IonTorrent data. PacBio: CCS and error corrected data usable, uncorrected not yet.
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Numerics for Chemical Engineering
Numerical models for chemical and process engineering
NCE Calculation Framework is a library of routines, models and data applicable to chemical and process engineering calculations, written in Java. -- NEW -- www.chesolver.com *ONLINE CALCULATORS*. A set of solvers to perform calculations consistently on any device, from smart-phone to desktop. The project includes the following ready to use software all based on the same core library: * Online Calculators at www.chesolver.com * Extensions for Libreoffice/Openoffice Calc... -
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vision2
Binocular vision examination using shutter glasses
Vision2 serves as tool for ophthalmologists and other vision testing professionals. It's useful for a variety of ophthalmology testing applications related to stereo vision. It implements many of classical tests but also new types of vectographic and random dot exams. Program was created as part of diploma thesis in Wroclaw University of Technology in Poland. -
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Virtual Nodes Parallelization for MicroModelica models. This tool performs Virtual Nodes Parallelization on a given MicroModelica model for being simulated in QSS Solver. The objective is to reduce the error introduced by simulating large-scaled models in parallel on QSS Solver simulating tool. This is done through redundant computations on certain state variables of the model. These redundant computations are called Virtual Nodes.
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fNBookForm2 for Mathematica
print sci num with powers (txtbook) + read back
...Easy, quality, comprehensive. booknum reads such. an important aspect is that the result maintains both accuracy and precision and has rounding control. doing this sometimees requires careful planning (error-prone complicated conversions). can read them back from textbook (into Mathematica) preservingly (for historic reasons files were also in https://sourceforge.net/projects/periodictablemm/) -
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ICE (Interval Calculator for Engineer)
Interval Calculator for Engineer
ICE is a simple mathematical calculator with very useful shortcuts for Engineer: works natively with tolerance, can run Monte Carlo analysis, uses engineer notation, includes most of the day by day functions used by engineers. -
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erf
error function and related functions in pure standard Fortran 2008
Fortran 2008 added 3 new intrinsic functions: erf, erfc, erfc_scaled. However, they take only real arguments. This package provides a BSD licensed Fortran 2008 module with erf(z), where z is a complex argument. The calculation is based on calculating w(z), the Faddeyeva (plasma dispersion) function. Two algorithms are implemented: TOMS 680 and 916, http://www.netlib.org/toms/. The simple test program calculates values in the Abramowitz, Stegun. -
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MuffinEC
Multi-technology, INDEL aware error correction for NGS data
MuffinEC is an error correction software capable of handling all types of errors (insertion deletions, mismatches and unknown bases). It officially supports four technologies (Illumina, 454, ion Torrent and PacBio - experimental) and it also has a generic setup for others (old and/or new). It is released under LGPL version 3.0. MuffinEC can use multicore systems, thanks to its OpenMP implementation. -
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Trowel - Sequencing Error Corrector
Error Correction Module for Illumina Sequencing Reads
Trowel is an error correction module for Illumina sequencing reads, which is based on the k-mer spectrum approach. This tool is the first tool that uses a quality threshold instead of a coverage cutoff in order to extract trusted k-mers. This tool guarantees high accuracy and speed. This tool has been developed since 21. Jan. 2013 by Euncheon Lim in Prof. -
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...Perform evaluation on alignment quality reals that CUSHAW3 consistently outperforms CUSHAW2, BWA-MEM, Bowtie2 and GEM in terms of single-end and paired-end alignment. Furthermore, our aligner has demonstrated better paired-end alignment performance than Novalign3 for short-reads with high error rates.
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Virastyar
Virastyar is an spell checker for low-resource languages
Virastyar is a free and open-source (FOSS) spell checker. It stands upon the shoulders of many free/libre/open-source (FLOSS) libraries developed for processing low-resource languages, especially Persian and RTL languages Publications: Kashefi, O., Nasri, M., & Kanani, K. (2010). Towards Automatic Persian Spell Checking. SCICT. Kashefi, O., Sharifi, M., & Minaie, B. (2013). A novel string distance metric for ranking Persian respelling suggestions. Natural Language Engineering,... -
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Ruby classes for arbitrary precision floating point and arbitrary precision complex numbers. Keeps track of accumulated error. Uses overloaded operators. Also some testing programs. Used with a Ruby version of sode (sode.rb).Ruby versions new
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ExactCalc
Software for exact computing based on interval arithmetic.
...Sometimes is more easy to use numerical unstable algorithm to solve problem. Instability is actually speed of accumulating the truncation error, but it can be decreased arbitrary by using more precise computation. Interval arithmetic provides us control of accumulating truncating error. To save Your time using CPU time this program provides interpreter of simple programming language based on interval algebra with arbitrary precision arithmetic. -
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JBernstein
JBernstein: Exploration techniques for non-linear constraint checking
...Concerning performance, the tool enables to check all examples in the PVS Bernstein testsuite within a second, which can be an order of magnitude faster than some other tools such as QEPCAD or REDLOG. Although JBernstein uses double, it offers automatic error-estimation capabilities (experimental) so that the generated result is correct (the solver may return unknown when the error-estimate is too large) -
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Scientific data elaborator
The data elaborator is a new project to manage scientific data
This program can make histograms, table and graphics of datas, study the error propagation during a measure, it is usefull if you have to do study errors propagations. The output are latex files, so it is easy for you just put them into your relations. -
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Botnet Detectors Comparer
Compares botnet detection methods
Compares botnet detection methods by computing the error metrics by reading the labels on a NetFlow file. The original NetFlow should have a new column for the ground-truth label, and a new column with the prediction label for each botnet detection method. This program computes all the error metrics (TPR, TNR, FPR, FNR, Precision, Accuracy, ErrorRate, FMeasure1, FMeasure2, FMeasure0.5) and output the comparison results. -
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Musket - short read error corrector
a parallel short-read error corrector for Illumina sequencing
...Our performance evaluation results, in terms of correction quality and de novo genome assembly measures, reveal that Musket is consistently one of the top performing substitution-error-based correctors. In addition, Musket is multi-threaded using a master-slave model and demonstrates superior parallel scalability compared to all other evaluated correctors as well as a highly competitive overall execution time. -
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libcerf
Complex error functions, Dawson, Faddeeva, and Voigt function
A self-contained C library providing complex error functions, based on Faddeeva's plasma dispersion function w(z). Also provides Dawson's integral and Voigt's convolution of a Gaussian and a Lorentzian.
