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Showing 16942 open source projects for "java open source"
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OpenATPOL
A reference implementation of the Polish geobotanical grid
This project is a reference, open source implementation of the coordinate conversion algorithms for the Polish geobotanical grid called ATPOL. -
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MGF2MGF CH
Convert mgf mass values to their nearest elemental formula
MGF2MGF CH processes mgf files (mascot generic format). It: converts masses to their nearest elemental formula mass (provided that you supply an empirical formula), can normalise intensities to the base peak of a block of ions, produces a new file with the prefix of your choice. You: specify the input line that contains the empirical formula of the parent ion, specify the key that identifies a formula and then the formula) separated by one space character, either ... -
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CorThiZon
Cortical Thickness of brain by Zones
CorThiZon is a Matlab toolbox. MRI 3D T1 images are treated to estimate cortical thickness by zones in native and normalized space. It uses a Laplace-based technique following brain segmentation. Results can be easily reported in Excel files for further statistical analysis. If you use this toolbox, please reference: ‘Early diagnostic of Alzheimer’s disease using cortical thickness: impact of cognitive reserve', Querbes O, Aubry F, Pariente J, Lotterie JA, Démonet JF, Duret V, Puel M,... -
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HarmonicsFX
Dynamic visualization of Harmonic Functions
Dynamic visualization of Harmonic Functions: sin(kx-wt) and cos(kx-wt) -
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kicad StepUp
kicad StepUp allows exporting kicad 3D board and comps in STEP AP214
kicad StepUp: a new approach to export kicad board and modules in STEP AP214 (with colors). With kicad StepUp, it is possible to work in kicad EDA with the same component model data available in the STEP AP214 3D format, and obtain a 3D STEP AP214 model of the pcb board and a complete board assembles with electronic modules, to be used for MCAD interchange. The accurate 3D visualization of components on board assembles in kicad 3dviewer, is maintained in the same accuracy and aspect in... -
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MACE Algebraic Calculator
MACE is a Mathematical program for Algorithms, Calculations, Equations
MACE is a Mathematical program for Algorithms, Calculations and Equations. It is designed to be as easy to run as a hand-held calculator. The goal is a neat tool covering all fields of mathematics at advanced highschool and university level. MACE has 230 logical operations, statistical distributions and functions in the fields Analysis, Arithmetic, Complex Functions, Linear Algebra, Differential Calculus, Statistics and Signal Processing. MACE provides a dialog, which supports you to... -
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Arduino garden PRS agent
A PRS agent designed to control our automated garden
This code implements a Procedural Reasoning System (PRS) agent for the control of our Arduino powered automated garden. -
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The Elvira project is a suite of tools to perform high-throughput genomic assemblies of repetitive, structured samples such as viruses or targeted regions of larger genomes.
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CMD Plot Tool
Calculates and plots Colour Magnitude Diagrams from Astronomical data
CMD Plot Tool calculates and plots Colour Magnitude Diagrams (CMDs) from astronomical photometric data, e.g. of a star cluster observed in two filter bandpasses. It can handle multiple file formats (plain text, DAOPHOT .mag files, ACS Survey of Galactic Globular Clusters .zpt files) to generate professional and customised plots, without the usual steep learning curve. Development using Python, OOP and a formal software development lifecycle model (Agile) allowed for the creation of an... -
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CLP Calculator
A calculator for solving problems using Constraint Logic Programming.
It is a simple calculator for solving problems using Constraint Logic Programming. Thanks to it, we can quickly see solution of: - Combinatory problem (Einstein's Riddle) - Scheduling problem (Museum of Art) - Optimization problems (Map Coloring) -
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OPC2MongoDB
Free tool to read data from OPC sources and save to a MongoDB database
This tool allows to connect to OPC UA and DA servers, poll for data and subscribe to events and write data in real time to a MongoDB database. It is simple to configure, the opc2mongodb.conf file is self explained, it must be put in the same folder as the exe file. The code is written in C# and it uses the h-OPC and the oficial MongoDB libraries for C#. Requires the .NET fremework 4.6 or later. Need any help? Create an issue here or contact me. Here is my LinkedIn contact:... -
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Xplico
Xplico is a Network Forensic Analysis Tool (NFAT)
Xplico is a Network Forensic Analysis Tool (NFAT). The goal of Xplico is extract from an internet traffic capture the applications data contained. For example, from a pcap file Xplico extracts each email (POP, IMAP, and SMTP protocols), all HTTP contents, each VoIP call (SIP, MGCP, MEGACO, RTP), IRC, WhatsApp... Xplico is able to classify more than 140 (application) protocols. Xplico cam be used as sniffer-decoder if used in "live mode" or in conjunction with netsniff-ng. Xplico is used... -
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pyGear
Precise gear geometry generator for spur and helical gears
A python gear generator that serves as CAE/CAD-preprocessor for involute gears based on pythonOCC. It allows for the computation of dynamic properties and the creation of exact geometries from a minimal input set. PyGear can simulate the tool geometry and kinematics of standard gear hobbing tools to generate precise flank, tooth root and tip geometries. -
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Jam--Nuclear Physics Data Acquisition
Java-based nuclear physics data acquisition.
This project now lives at https://github.com/dwvisser/jam-daq-code/ Jam is an easy-to-use self-contained data acquisition and analysis system for VME-based (or CAMAC-based) nuclear physics experiments. Jam has an easy, standard GUI for taking and sorting multi-parameter event-based data into 1-d and 2-d histograms. -
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CUDASW++: Smith-Waterman Algorithm
The fastest Smith-Waterman protein database search algorithm on GPUs
CUDASW++ software is a public open source software for Smith-Waterman protein database searches on Graphics Processing Units with CUDA. This software have been added to the NVIDIA Tesla Bio Workbench (http://www.nvidia.com/object/swplusplus_on_tesla.html -
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CompleXChange
differential analysis of combinatorial protein complexes
The increasing wealth of transcriptomic data and current computational tools enable to infer how protein interactomes and complexomes may be assembled in specific samples. With CompleXChange this information can be exploited to conduct differential analyses of the dynamic protein complexome in a quantitative manner. The corresponding publication can be found on https://doi.org/10.1186/s12859-019-2852-z. -
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Ljudmiljö i Stationssamhällen
Simulering av åtgärder mot buller från järnväg
En demonstrator av ett verktyg som simulerar åtgärder mot buller från järnväg. Demonstratorn är utvecklad inom projektet "God ljudmiljö i stationssamhällen - Verktygslåda och exempel till nytta för klimat, hälsa och resurseffektivitet" som bedrevs inom ramen för MISTRA Urban Futures med finansiering från programkontoret inom det strategiska innovationsprogrammet InfraSweden2030 genom Vinnova, samt från Västra Götalands regionen och Trafikverket. Projektet utfördes av RISE, Chalmers och VTI... -
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Android Gps to Sms
Android Phone app that sends your GPS location in a SMS to a recipient
This app can be useful for you if you need to send your GPS location in an SMS to any recipient that is in your contact list (or a phone number that you can enter). The sent SMS contains a link to a Google Map with the position that you have sent. The app has been developed in french and english (US). -
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The library offer perfect number mathematic abstract, and contain some algebra computation/deduction tools.
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SegyMAT is a set of Matlab/Octave m-files to read and write SEG Y data following SEG Y Revision 0 and 1
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PowerDEVS is an integrated tool for hybrid systems modeling and simulation based on the DEVS formalism.
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reditools
RNA editing detection by NGS data
REDItools are python scripts developed with the aim to study RNA editing at genomic scale by next generation sequencing data. RNA editing is a post-transcriptional phenomenon involving the insertion/deletion or substitution of specific bases in precise RNA localizations. In human, RNA editing occurs by deamination of cytosine to uridine (C-to-U) or mostly by the adenosine to inosine (A-to-I) conversion through ADAR enzymes. A-to-I substitutions may have profound functional consequences and... -
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SmGen
Verilog Finite State Machine (FSM) Code Generator
SmGen is a finite state machine (FSM) generator for Verilog. On the other hand, it is not an FSM entry tool. The input is behavioral Verilog with clock boundaries specifically set by the designer. SmGen unrolls this behavioral code and generates an FSM from it in synthesizable Verilog. Clock boundaries are explicitly provided by the designer so there is good control on the expected timing -
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iTides
an internal tide generation GUI (in Matlab)
With the support of the NSF and ONR over the past few years we have developed a MATLAB tool that calculates the internal wave field generated by barotropic tidal flow of a nonlinearly stratified fluid past any arbitrary two-dimensional topography of finite extent You can download a recent version as a .zip file or get up-to-date version via the svn version (svn checkout svn://svn.code.sf.net/p/itides/svn/trunk itides-svn).
