Showing 118 open source projects for "run code"

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  • 1

    IQuant

    A pipeline for quantitative proteomics based upon isobaric tags

    ...It integrates post-processing tool of protein identification and advanced statistical algorithms to process the MS/MS signals generated from the peptides labeled by isobaric tags for quantification. IQuant can run from a graphical user interface (GUI) as well as a command-line interface and work with both Windows and Linux system. This website contains the IQuant software, an example data labeled by iTRAQ-8plex for testing and a user's manual. If you have any question about IQuant, please contact me: wenbo@genomics.cn. The source code of IQuant can be found here "https://sourceforge.net/p/iquant/code/".
    Downloads: 0 This Week
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  • 2
    Graphical Grammar Studio

    Graphical Grammar Studio

    An user friendly grammar tool for natural language processing tasks

    Full documentation with tutorials is included in the download package. Graphical Grammar Studio is a tool for applying grammars which behave as words acceptors/consumers and annotators. GGS grammars can be used to find and annotate sequences of words which respect certain conditions, in a given input. Its purpose is for creating NLP tools like phrase chunkers, named entity finders, pronoun co-reference solvers etc. A grammar is represented by a state machine which can be visualized, edited...
    Downloads: 0 This Week
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  • 3

    pymatlab

    A pythonic interface to MATLAB

    This package lets Python users interface and communicate with MATLAB from Python. Pymatlab makes it easier for users to integrate a project with a large MATLAB codebase into python scripts by using MATLAB scripts as a part of the python program. The basic functionality of this package is to send data from Python to MATLAB's workspace to be able to run Matlab function on the data. After processing you retrieve back data to...
    Downloads: 0 This Week
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  • 4
    Please participate in the SURVEY on rgedit's future: https://www.surveymonkey.com/s/VNMMJMJ your answers are much appreciated! Gedit (Gnome editor, www.gedit.org) plug-in allowing it to become an easy-to-use and yet light-weight IDE for the statistical programming environment, R (www.r-project.org).
    Downloads: 2 This Week
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  • 5

    NN Image Recognition (with source-code)

    This is ANN trained application to predict digits from 0 - 9.

    It can predict digits from 0-9 with Artificial Neural Network. I trained ANN with 100 samples of each digit. It takes input of 20x20 pixel image and predicts it with Neural Network. It may predict wrong digit due to very low sample data but it work 90% correctly. Note: JRE 1.6 is required to run this application.
    Downloads: 0 This Week
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  • 6

    BriCS

    SaaS for running simulation models in the cloud

    ...BriCS enables researchers with software simulation models to access the rapid scale out opportunities of the cloud. Why wait days or weeks for a series of trials to complete when you can run them in parallel in the time it takes to complete one?
    Downloads: 0 This Week
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  • 7
    SpeedyQuant

    SpeedyQuant

    Quantifies DNA, RNA or protein bands in agarose or acrylamid gels.

    ...When calculating the relative strength of each band (% of most prominent band) it takes the background noise into account. This leads to accurate and comparable results. Several options can be used to tune the detection process. Here we provide the source code of the program (Perl script) that can be run on any OS with Perl installed (e.g. the freely available Strawberry Perl). A Win-64bit executable is available at: www.foreach-bioinformatics.de
    Downloads: 0 This Week
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  • 8

    NetStress-NG

    NetStress is a DDoS and network stress testing tool.

    Syn Flood Attacks SYNFlood with static source port SYNFlood with random source port SYNFlood with static source ip address SYNFlood with random source address SynFlood with fragmented packets ACK Flood Attacks ACK Flood with static source port ACK Flood with random source port ACK Flood with static source ip address ACK Flood with random source address ACK Flood with fragmented packets FIN Flood Attacks FIN Flood with static source port FIN Flood with random source...
    Downloads: 6 This Week
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  • 9

    ATMSP

    ATMSP - A Tiny Mathematical Speed Parser

    A Tiny Mathematical Speed Parser ATMSP is a portable C++ parser for mathematical expressions like "sin(x)+y^2" e.g. These may contain arbitrary numbers of functions, variables and constants. Major design goal was minimalistic size and maximum speed. Tiny 320 code-lines offer a parser plus bytecode-generator, 26 mathematical functions and 17 supported base-types including complex and arbitrary MPFR-multiprecision. Both parser and bytecode may run in threads. The usage of ATMSP is most simple - just include a single header in your own code and go. Reasonably experienced coders may implement other base-types like bool, SSE2, rationals or bigint's with a few changes. ...
    Downloads: 0 This Week
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  • 10

    nwhess2freq

    Calculates frequencies/modes from an nwchem generated hessian

    ...The advantage of having a separate script for this is that you can use the same hessian to calculate frequencies for different isotopic substitutions i.e. you only have to run one nwchem calculation. The script is finished in its current form in the sense that it is feature complete. Feel free to amend, translate, copy, steal etc. See the README in the code repository for instructions. Installation: Simply download the file and start Octave in the download directory.
    Downloads: 0 This Week
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  • 11
    Octclipse

    Octclipse

    Octave Eclipse GUI

    Octave development environment built upon Eclipse's Dynamic Languages Toolkit (http://www.eclipse.org/dltk/). Distributed as an Update site for Eclipse 3.7 Indigo and Indigo-based package for several platforms. Supports search, autocompletion, launching scripts, interactive console, debug and integrated plotting on Octave versions 3.2.x, 3.4.x and 3.6.x. The current goal is to make it running out-of-box on multiple platforms. Currently only Linux and Windows are supported. Mac...
    Downloads: 0 This Week
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  • 12

    fem2d

    2D Finite Element Method Tools

    Collection of programs developed to perform various engineering analyses on structures using the finite element technique.
    Downloads: 0 This Week
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  • 13
    Seqshell

    Seqshell

    A JAVA GUI for performing the function of Tophat and Cuffdiff

    Combines the Tophat and Cuffdiff functions in one GUI interface. tophat and cuffdiff are required to be pre-installed in the system. By modifying the program, it can be used to execute any command line programs even R packages since R can also be run from commandlines. New functions: Batch processing function for Tophat. You can now execute as many mapping jobs as you want with tophat. This program will save the output into separate folders. An alert email will be sent to your email address when the job is done. (You will need to modify the source code to change the content to meet your special needs) Run-time information will be displayed in a JAVA output window.
    Downloads: 0 This Week
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  • 14
    CTruck3D _Open

    CTruck3D _Open

    realistic truck & car simulator, with OpenGL graphics

    update: https://sourceforge.net/projects/newctruck3drally/ It's a 3D, physically realistic truck/car simulator, oriented to dirt tracks. This is subsancially kept as hystorical. The environment is a hilly terrain which can also be user-defined in the form of a Bitmap image file (where intensity of red component defines height). It's similar to the classic "Terep 2". Particular care for internal cam. Written in standard C. There's a Windows executable ready for use, but it's compilable...
    Downloads: 0 This Week
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  • 15

    Frc Robot Simulator

    A library that allows programs for a NI CRIO to be run on a computer.

    A simulator that allows programs written in Java for a National Instruments CRIO to be run on a local computer by overloading the libraries provided by WPI. Some things we've fixed since 0.1a: Kinect no longer throws an exception upon instantiation, the Watchdog is usable, array elements can now be edited in the gui, and lots of under the hood reimplementation to replace native methods. DISCLAIMER: this is not like the diamond bullet studios simulation, this only simulates how the hardware would act, so that code can be tested. ...
    Downloads: 0 This Week
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  • 16

    GPUmat

    GPUmat is a C/C++ GPU engine for Matlab based on NVIDIA CUDA.

    Please download Windows and Linux version by clicking on "Browse All Files". GPUmat allows standard MATLAB code to run on GPUs. The engine is written in C/C++ and based on NVIDIA CUDA. Please contact gpyougroup@gmail.com for any questions. Unfortunately GPUmat was compiled for CUDA 5.0 and we basically stopped any support for other CUDA version because we don't have the resources to do it. But you can compile the source code if you want.
    Downloads: 0 This Week
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  • 17
    MIDA

    MIDA

    Mitochondiral Infectious Damage Adaptation (MIDA) model of aging

    This project provides the source code for the Mitochondiral Infectious Damage Adaptation (MIDA) model of aging. A probabilistic modeling approach is applied by solving the master equation in mitochondrial quality state space in the presence of fusion-fission events, decay of functional quality, mitophagy and mitochondrial biogenesis, as well as molecular damage originating from a random source or from infectious events during fusion and fission. The provided source code is written in...
    Downloads: 0 This Week
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  • 18

    Atlas2Cloud

    Atlas2 Genome Analysis Pipeline on Amazon Web Services

    This is the backend source code of the Atlas2-Cloud pipeline on Amazon which starts and terminates worker nodes, runs analysis and monitors worker instances. It is PRIMARILY meant to be used through Amazon Web Services (AWS) management console by looking for the public Atlas2-Cloud machine image. Alternatively, the code can also be used for running the pipeline from your computer.
    Downloads: 0 This Week
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  • 19
    SFish

    SFish

    Basic real-time simulation engine in C++

    In SFish you can model simulation objects with attributes and behaviour (continuous over time and not-continuous over time, latter one being events) and the communication between objects; then you can run simulations (real-/non-real-time) given a set of objects with specific attributes and see what happens in cause of their behaviour.
    Downloads: 0 This Week
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  • 20

    rp6simul

    rp6simul is a simulator for the RP6 robot (AREXX Engineering)

    ...Besides support for all peripherals on the robot base, the simulator also fully supports the m32 extension module, and both can be simulated either independently or simultaneously. Furthermore, a simple 2d environment can easily be created to test lighting, collision, motor speeds and so on. The simulator does not run native AVR files, but instead a thin wrapper is provided so that the AVR code can be compiled natively. Thanks to this wrapper, and a flexible Lua driver interface, the simulator emulates most of the IO registers, requiring no or minimal code modifications. rp6simul is primarily developed on Linux, but a Windows version will also be released.
    Downloads: 0 This Week
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  • 21
    This material enables IBM SPSS Statistics users to run code written in the R language inside Statistics. Additional free items for R in Statistics and other materials are available from the SPSS Community at www.ibm.com/developerworks/spssdevcentral
    Downloads: 12 This Week
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  • 22
    cloudFlu
    HPC cloud computing for OpenFOAM (R) users
    Downloads: 0 This Week
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  • 23

    clinicalStudyTracker

    Clinical study tracker tracks case study members through activities.

    Developed at Medical Research Council UK to meet a common clinical trial need to track various types of clinical data. Users log dates of completed tasks against participant ID. Simple, useable, reduces lost data! Makes graphical progress reports.
    Downloads: 0 This Week
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  • 24
    This project aims at providing a user package for the molecular dynamics software LAMMPS, which allows the complete simulation to run on a GPU. Additional information and svn access to "bleeding etch" code can be found on the project website below.
    Downloads: 0 This Week
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  • 25
    balloon-foam
    was moved to http://sourceforge.net/projects/cloudflu
    Downloads: 0 This Week
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