Showing 4627 open source projects for "void based linux"

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  • 1

    QSdpR

    Viral Quasispecies Reconstruction software based on QSdpR algorithm

    This is a viral quasispecies reconstruction software for quasispecies assembly problem on mRNA viruses, which is based on a correlation clustering approach and uses semidefinite optimization framework. The software accepts a reference genome, a NGS read set aligned to this reference and set of SNP locations in the form of a vcf file and outputs an optimal set of reconstructed species genomes which describes the underlying viral population.
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  • 2

    VeriSiMPL

    Verification via biSimulations of Max-Plus-Linear models

    This toolbox is used to generate finite abstractions of autonomous Max-Plus-Linear (MPL) systems over R^n. Abstractions are characterized as finite-state Labeled Transition Systems (LTS). The LTS finite abstractions are shown to either simulate or to bisimulate the original MPL system. LTS models are to be verified against given specifications expressed as formulae in Linear Temporal Logic (LTL) and Computation Tree Logic (CTL). The toolbox intends to leverage the NuSMV model checker. Models...
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  • 3
    CalclipseMath

    CalclipseMath

    Java math expression parser and script interpreter

    CalclipseMath – CalM for short – is a math parser written in Java. With a few lines of code CalM enables your application to evaluate user-supplied mathematical expressions, such as "e^(sin .25pi)" and "(sqrt e)^(sqrt 2)". The standard configuration of the parser has a wide variety of mathematical operations, ranging from basic arithmetic, trigonometry, combinatorics, linear algebra and more. CalM includes a script interpreter which is based on the math parser. The CalM scripting language...
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  • 4

    Adele

    Adhoc Data Exploration - Live & Easy

    Adele was developed to simplify the daily work with data. Use it as a swiss knife to fill the gap between your work with spreadsheet application like MS Excel and enterprise servers like SAP ERP. Specialized tools like Rapid Miner, KNIME or similiary stuff should not be replaced. But Adele is designed for business people working with spreadsheet applications to analyse their data. There are many technical concepts in an easier way included. For example realtime OLAP, transformations,...
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  • 5
    VBS for Research on the Internet

    VBS for Research on the Internet

    Welcome to the Volunteer-Based System for Research on the Internet!

    Welcome to the Volunteer-Based System for Research on the Internet! This system is designed to provide detail data about applications used in the Internet. This information can be used for: - obtaining the knowledge which applications are most frequently used in the network - providing the users some basic statistics about their Internet connection usage (for example for which kinds of applications their connection is used the most) - creating scientific profiles of traffic generated...
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  • 6
    ImagingAnalysis

    ImagingAnalysis

    Direct tissue-level image quantification package for Mathematica

    ImagingAnalysis is a Mathematica package that performs grid-based analysis of time-lapse imaging data saved in a sequence of TIFF files. This package requires Mathematica 7.0. Revised on 14 May 2017: Bugs are fixed and incompatibility issues are resolved. The current version runs on Mathematica 11.
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  • 7
    Java Information Retrieval System (JIRS) is an information retrieval system based on passages. This system has the advantage of being able to change to the different modules from the system and their functionality modifying the configuration XML file
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  • 8
    Assists users to analyse and select players in Australian Football League (AFL) based football fantasy competitions. Displayed in a Java Swing GUI, users can sort and filter players based on many statistical categories.
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    Downloads: 1 This Week
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  • 9
    bel_fft

    bel_fft

    FFT co-processor in Verilog based on the KISS FFT

    bel_fft is a FFT co-processor that can calculate FFTs with arbitrary radix. It is a hardware implementation of the free software Kiss FFT ("Keep it simple, Stupid!"). The target was to allow a simple replacement of the software code with the hardware implementation. Therefore bel_fft comes with a software driver that is compatible with the Kiss FFT routines. bel_fft also has a modular architecture and allows interfacing different bus architectures. So far AMBA AXI, Altera's Avalon bus and...
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    Total Network Visibility for Network Engineers and IT Managers

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  • 10
    Wood Wars 3D

    Wood Wars 3D

    Open-Source, 3D Printed, Light, Tabletop Strategy War Game

    Check the wiki for rules and more information. Wood Wars 3D is an Open-Source, 3D printed, highly accessable, light, tabletop strategy war game based on classic war games like Little Wars by H. G. Wells. Mix and match race and classes to customize your armies. Dodge and move around terrain to confront your opponent and launch devastating marble roll attacks against approaching opponents. The source code for this project isn't like others on Sourceforge. It isn't code, It's STLs and...
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  • 11

    detectMITE

    Detection of Miniature Inverted Repeat Transposable Elements

    detectMITE - a MATLAB-based tool for detecting miniature inverted repeat transposable elements (MITEs) in genomes. [1] Who are we? Please visit website: http://bioinfolab.miamioh.edu [2] How to cite detectMITE? Ye C, Ji G, Liang C (2016) detectMITE: A novel approach to detect miniature inverted repeat transposable elements in genomes. Sci. Rep. 6, 19688. http://www.nature.com/articles/srep19688 Ye C, Ji G, Li L, Liang C (2014) detectIR: A Novel Program for Detecting Perfect...
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  • 12
    IPAS for protein sequences

    IPAS for protein sequences

    multiple alignment algorithm for protein sequences

    IPAS is a new and practial protein multiple sequence alignment algorithm based on iterative progresive alignment algorithm Assessed on BAliBASE 3.0, PREFAB 4.0, SABMARK 1.65, and OXBENCH, MSAProbs achieves the statistically highest alignment accuracy, compared to ClustalW 2.0.10, MAFFT 6.717( using L-INS-i with --maxiterate = 1000), MUSCLE 3.8.31, ProbCons 1.12, and Probalign 1.3.
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  • 13
    Open Automation

    Open Automation

    Building automation (like KNX or OpenHAB) software (like CometVisu).

    This project aims to provide software usefull in automation tasks like building automation. Different backends are supported like KNX or OpenHAB. Note: The project has moved to GitHub. Please consult: https://github.com/CometVisu/CometVisu - for the CometVisu https://github.com/OpenAutomationProject - for the different OpenAutomation subprojects
    Downloads: 6 This Week
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  • 14
    Chapel

    Chapel

    a Productive Parallel Programming Language

    Chapel is an emerging parallel programming language whose design and development are being led by HPE in collaboration with academia, computing labs, and industry. Chapel's goal is to improve the productivity of parallel programmers, from laptops to supercomputers. **Please note that Chapel development has moved to GitHub**
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  • 15

    IOA AM code

    Implementation of the core routine for AM analysis from the IOA AMWG

    The UK Institute of Acoustics (IOA) amplitude modulation working group (AMWG) has developed a method for analysing and rating AM. This has been produced as an example of an implementation of the routine described in the IOA AMWG report. It is written in the Python language which is freely available. V1.5 is compiled for Windows (XP onwards). The responsibility for the correct implementation and application of the software or any modification thereof rests with the end user. It should not...
    Downloads: 5 This Week
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  • 16
    8 Sounds USB
    XMOS based, USB2 audio card, low power consumption, small form factor, 8 synchronous input channels and 4 stereo output channels.
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    Downloads: 5 This Week
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  • 17
    Lib Finance Math GCC (C++) Lotus 123

    Lib Finance Math GCC (C++) Lotus 123

    Library Finance Math for GCC (C++)

    This library has the implementation of all financial functions in the Lotus 1-2-3 spreadsheet for C++ language, respecting the same nomenclature used (where possible). The financial features of this library are based on the collection of finely-tuned features found in the old Lotus 1-2-3 spreadsheet software. For more libraries, go to: https://sourceforge.net/u/augustomanzano/profile. To see my curriculum vitae go to: http://lattes.cnpq.br/8184615061457853. Augusto...
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  • 18

    Gentoo CNC

    Solution for changing your device into full-feature CNC controller

    GentooCNC is a Gentoo based Linux didtribution designed to support hard real-time control of equipment such as industrial machine tools, 3D printers, laser cutters, robots, and coordinate measuring machines using LinuxCNC. GentooCNC is designed to target embedded platforms such as the BeagleBone, Mini2440, as well as conventional desktop platforms.
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  • 19
    CamBA is a Linux package for statistical analysis, by script/GUI, of neuroimaging data (fMRI/sMRI), developed at the Brain Mapping Unit, University of Cambridge. Non-parametric permutation-based statistics. Input images: 4D NiFTI files, output: HTML/
    Downloads: 1 This Week
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  • 20
    GeoWE

    GeoWE

    GeoData Web Editing [core SIG Web]

    GeoWE is an open free GIS platform oriented to advanced geodata editing on The Web. The main aim of this initiative is to move the strenghts usually linked to desktop GIS to a web environment, by leveraging open source technologies. This is a free software project that is part of the open source GIS world, and it is developed in Java using the Google Web Toolkit framework. The geowe-core is being developed using the following technologies: - GWT (Google Web Toolkit) - JBoss...
    Downloads: 5 This Week
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  • 21
    metasort

    metasort

    A metagenome assembler by reducing microbial community

    Most current approaches analyze metagenomic data with the participation of reference genomes. However, novel microbial communities extend far beyond the coverage of reference databases and de novo metagenome assembly from complex microbial communities still remains a great challenge. Here we present a novel experimental and bioinformatic framework, metaSort, for effective construction of bacterial genomes from metagenomic samples. MetaSort provides a sorted mini-metagenome approach based on...
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  • 22
    KAPPA (Key Aminoacid Pattern-based Protein Analyzer) is a sequence search program dedicated to the discovery and clustering of proteins defined by a key aminoacid pattern.
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  • 23

    Advanced Numerical Instruments 3D

    Advanced numerical instruments: adaptive meshing, FE methods, solvers

    Ani3D provides portable libraries for each step in the numerical solution of systems of PDEs with variable tensorial coefficients: (1) unstructured adaptive mesh generation, (2) metric-based mesh adaptation, (3) finite element discretization and interpolation, (4) algebraic solvers.
    Downloads: 4 This Week
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  • 24
    J-ICE
    J-ICE stands for Jmol interface for crystallographic and electronic properties. Is an extension of the powerful, platform independent molecular visualizer Jmol, towards crystallographic and electronic properties. More info will be given soon.
    Downloads: 2 This Week
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  • 25

    Hamstr

    A tool for directed ortholog search in ESTs and proteins

    HaMStR has moved to https://github.com/bionf/hamstr where it is now part of the HaMStR-OneSeq package. HaMStR is a profile hidden Markov model based tool for a directed ortholog search in EST or protein sequence data. The program takes a pre-defined core group of orthologous sequences (core orthologs) and a set of sequences from a search taxon as input. HaMStR then combines in a two-step strategy a pHMM based search and a reverse search via BLAST to extend the core ortholog group with...
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