Search Results for "hamstr"
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Showing 2 open source projects for "hamstr"
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Hamstr
A tool for directed ortholog search in ESTs and proteins
HaMStR has moved to https://github.com/bionf/hamstr where it is now part of the HaMStR-OneSeq package. HaMStR is a profile hidden Markov model based tool for a directed ortholog search in EST or protein sequence data. The program takes a pre-defined core group of orthologous sequences (core orthologs) and a set of sequences from a search taxon as input. HaMStR then combines in a two-step strategy a pHMM based search and a reverse search via BLAST to extend the core ortholog group with novel... -
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PhyloPipe
PhyloPipe is a combination of some polular phylogenetic software
Bioinformatics is a promising interdisciplinary, designed to use a computer to handle large and complex biological data, aiming at revealing the hidden mysteries of biology. Analysis of the evolutionary biology, one of the main branches of bioinformatics, uses several common software such as HaMStR,MUSCLE, RaxML. Running different procedures successively, we can get the evolutionary analysis eventually. Since the input and output data between different software are not always compatible...
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