Search Results for "gnu/linux" - Page 14
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Showing 17428 open source projects for "gnu/linux"
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Bowtie, an ultrafast, memory-efficient short read aligner for short DNA sequences (reads) from next-gen sequencers. Please cite: Langmead B, et al. Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol 10:R25.
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InteredgeDistance
An ImageJ macro to measure distance between two lines
InteredgeDistance is a macro for ImageJ/Fiji image analysis software. This tool measures the distance between two user-drawn lines on an image. For community help/support, please use https://forum.image.sc/. -
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SAM (Sequence Alignment/Map) is a flexible generic format for storing nucleotide sequence alignment. SAMtools provide efficient utilities on manipulating alignments in the SAM format. The main samtools source code repository moved to GitHub in March 2012. For ongoing development since then, see http://github.com/samtools/samtools
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Simple Event Correlator (SEC) is a lightweight event correlator for network management, log file monitoring, security management, fraud detection, and other tasks which involve event correlation.
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FreeEOS is a Fortran library for calculating the equation of state using an efficient free-energy minimization technique that is suitable for physical conditions in stellar interiors.
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Java Modelling Tools is a suite of scientific tools for performance analysis and modelling using queueing theory and colored stochastic Petri nets. Models are solved either with analytical, asymptotic or simulation methods; workload characterization tools are also included in the suite. See the project website for more details: http://jmt.sf.net
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ODIN
develop, simulate and run magnetic resonance sequences
ODIN is a free software framework for rapid prototyping of magnetic resonance imaging (MRI) sequences. The sequences can be tested, simulated and executed on scanner hardware from different manufacturers. -
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Community Z Tools
Tool support for the Z formal notation
Community Z Tools Project (CZT): Tools for editing, typechecking and animating Z specifications and related notations. Includes a Java framework for building formal methods tools. NOTE: development of CZT has now moved to GitHub: https://github.com/community-z-users/czt -
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C3D is a command-line tool for converting 3D images between common file formats. The tool also includes a growing list of commands for image manipulation, such as thresholding and resampling.
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Eagle Mode
Zoomable user interface (ZUI) with file manager, file viewers and more
...It integrates file viewers for most of the common file types, as well as an audio and video player. Furthermore, the virtual cosmos contains a chess game, a netwalk game, a 3D minesweeper game, a multi-function clock, a stock watchlist, some fractals, and a Linux kernel configurator in form of a kernel patch. -
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PreviSat
Satellite tracking software
PreviSat is a satellite tracking software for observing purposes. Very easy to use, it shows positions of artificial satellites in real-time or manual mode. PreviSat is able to make predictions of their passes, predictions of MetOp and COSMO-SkyMed flares, transits of all satellites, predictions of Starlink satellites passes and several other calculations. -
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OpenJUMP is a community driven fork of JUMP the "Java Unified Mapping Platform" GIS software. The original JUMP was developed by Vivid Solutions, released under GPL2 in 2003 and discontinued in 2006. During 2004 already some enthusiastic developers joined together to enhance further the features of JUMP. They launched an independent development branch called OpenJUMP. The name gives credit to the original JUMP development, and at the same time describes the objectives of this project to...
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SimSEE
Plataform for Simulation of Systems of Electrical Energy
SimSEE is a tool for optimal dispatch of hydrothermal electrical power systems. Yo can simulate de operation of petroleum fired plants, wind and solar farms, country interconnections and hydro plants with reservoires. -
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The Sashimi project hosts the Trans-Proteomic Pipeline (TPP), a mature suite of tools for mass-spec (MS, MS/MS) based proteomics: statistical validation, quantitation, visualization, and converters from raw MS data to the open mzML/mzXML formats.
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An Open Source model rocket simulator.
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MathGL
A library for scientific data visualization
A free cross-platform library of fast C++ routines for the plotting of up to 3-ranged data. It can export to bitmap and vector EPS/SVG files. There are window interfaces (GLUT/FLTK/Qt) and console tools. MathGL can be used from C/Fortran/Python/Octav/Lua -
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XMedCon
medical image conversion utility
a medical image conversion utility & library; hereby hoping to lower at least one barrier in medical research projects. -
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Open Programmer
An USB programmer for PIC, dsPIC, AVR, serial memories
An USB programmer for various devices, including PIC, dsPIC, AVR microcontrollers, and various kinds of serial eeproms -
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A library of C codes for storing and managing nuclear reaction networks, that is, ensembles of nuclear species and reactions among them.
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JGraphT is a free Java class library that provides mathematical graph-theory objects and algorithms. JGraphT supports a rich gallery of graphs and is designed to be powerful, extensible, and easy to use.
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OSRA is a utility designed to convert graphical representations of chemical structures and reactions, as they appear in journal articles, patent documents, textbooks, trade magazines etc., into SMILES or SD file format- a computer recognizable molecular structure You can find links to the binary executables here: https://sourceforge.net/p/osra/wiki/Download/
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Simulation of ion beam irradiation
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SWAN is a third-generation wave model, developed at Delft University of Technology, that computes random, short-crested wind-generated waves in coastal regions and inland waters.
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The Chemistry Development Kit (CDK) is a scientific, LGPL-ed library for bio- and cheminformatics and computational chemistry written in Java. The main home page of the CDK is now at: http://cdk.github.io
