Showing 85 open source projects for "sstap-beta-1.0.9.7"

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  • 1
    SPINA

    SPINA

    Structure parameter inference approach for endocrine feedback control

    SPINA is software for determining constant structure parameters of endocrine feedback control systems from hormone levels obtained in vivo. The first version of this cybernetic approach allows for evaluating the functional status of the thyroid gland, i.e. thyroid's secretory capacity (GT or SPINA-GT) and sum activity of peripheral deiodinases (GD or SPINA-GD). A second version has been developed for insulin-glucose homeostasis. It delivers the secretory capacity of pancreatic beta cells...
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    Downloads: 8 This Week
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  • 2
    PANDA

    PANDA

    A comprehensive and flexible quantification tool for proteomics data

    PANDA is a comprehensive and flexib tool for quantitative proteomics data analysis, which is developed based on our solid foundations in quantitative proteomics for years. Several novelties have been implemented in it. First, we implement the advantage algorithms of LFQuant (Proteomics 2012, 12, (23-24), 3475-84) and SILVER (Bioinformatics 2014, 30, (4), 586-7) into PANDA. Second, we consider the state-of-art concept of quantification reliability in this quantitative workflow. On the levels...
    Downloads: 4 This Week
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  • 3
    mzMatch is a Java collection of small commandline tools specific for metabolomics MS data analysis. The tools are built on top of the PeakML core library, providing mass spectrometry specific functionality and access to the PeakML file format.
    Downloads: 2 This Week
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  • 4

    pexm - JAGS module

    JAGS module for the piecewise exponential distribution

    This new module was built for users interested in a programming language similar to BUGS to fit a Bayesian model based on the piecewise exponential distribution. The module is an extension of the open-source program JAGS. The PE distribution is widely used in the fields of survival analysis and reliability. Currently, it can only be implemented in JAGS through methods to indirectly specify the likelihood based on the Poisson or Bernoulli probabilities. Our module provides a more...
    Downloads: 0 This Week
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  • 5

    Hyperspectral data analysis in R

    Handling and basic analysis of hyperspectral data in R

    The hsdar package contains classes and functions to manage, analyse and simulate hyperspectral data. These might be either spectrometer measurements or hyperspectral images through the interface of rgdal.
    Downloads: 2 This Week
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  • 6
    We are developing data standards and software tools that implement these standards to develop a systemic approach to modeling, capturing, analyzing and disseminating flow cytometry data.
    Downloads: 2 This Week
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  • 7
    Downloads: 0 This Week
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  • 8

    biOP

    biOP [bio~ObjectPascal/bio~Delphi] bioinformatics libraries

    Downloads: 0 This Week
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  • 9
    An R package for metrology. metRology provides classes and calculation and plotting functions for metrology applications, including measurement uncertainty estimation and (eventually) inter-laboratory metrology comparison studies.
    Downloads: 0 This Week
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  • 10
    TEACUP

    TEACUP

    TCP Experiment Automation Controlled Using Python

    TEACUP automates many aspects of running TCP performance experiments in a specially-constructed physical testbed. TEACUP enables repeatable testing of different TCP algorithms over a range of emulated network path conditions, bottleneck rate limits and bottleneck queuing disciplines. TEACUP utilises a text-based configuration file to define experiments as combinations of parameters specifying desired network path and end host conditions. When multiple values are provided (e.g. for TCP...
    Downloads: 0 This Week
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  • 11
    Barber-cushman model scripted in R
    Downloads: 0 This Week
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  • 12
    Penobscot River RKM Calculator

    Penobscot River RKM Calculator

    Look up in river distances in the Penobscot River drainage.

    Allows user to input a .csv of UTM coordinates within the Penobscot River basin and calculates in-river distance (in kilometers) from the river's mouth to the locations of interest. The results are output into a new .csv file named yourfilename+RKM.csv. For the purposes of this calculator, river kilometer 0 is located at 516414E 4927755N in UTM Zone 19N, near the southwest corner of Verona Island. Simply download the setup file and run it to install the program. Please contact me with...
    Downloads: 0 This Week
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  • 13

    Mobile Tracking Processor

    An easy way to remove noise from mobile telemetry data

    This program takes a .txt input file containing the raw output from a Lotek SRX800 receiver and removes false detections based on a user-provided .csv of tagging data.
    Downloads: 0 This Week
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  • 14
    Maui

    Maui

    Maui is the Maltcms User Interface

    Maui is the Maltcms User Interface, a rich client application for Chromatography-Mass Spectrometry and related research areas.
    Downloads: 0 This Week
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  • 15

    MoCObench

    Benchmark instances for multiobjective combinatorial optimization

    Benchmark instances for multiobjective combinatorial optimization
    Downloads: 0 This Week
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  • 16
    SWire4R

    SWire4R

    An R package enabling R to interact with Stata for data exchange

    Swire4R is an R package for exchanging data between R and Stata. SWire4R uses SWire for connecting R to Stata. SWire is a plugin for Stata >=13 which acts like a server: client applications can query SWire for interacting with Stata. SWire4R acts like a client application for Swire, providing the user with various basic functions for retrieving data from Stata and exporting data to Stata. SWire4R must be compiled by R. For more information about SWire, visit https://sourceforge.net/projects/swire/
    Downloads: 0 This Week
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  • 17

    Ship Lock Scheduling

    Scheduling lockages at ship locks with several parallel lock chambers

    This Java software includes algorithms of combinatorical optimization for the NP-hard offline ship lock scheduling problem. Solutions and performed computations can be displayed graphically. Besides, there is a framework for generating test instances and running these in parallel, as well as R/JGR code for statistical evaluation. Some tools for estimating the quality of calculated solutions will be further improved. Initially the software was developed within a project of TU Berlin regarding...
    Downloads: 0 This Week
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  • 18

    Waterloo

    Java-based scientific graphics

    Java-based scientific graphics with support for Java, Groovy, MATLAB, Python, the R statistical environment, Scala and SciLab.
    Downloads: 0 This Week
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  • 19

    Corbata

    CORe microBiome Analysis Tools

    Corbata is a set of statistical tools that can be used to analyze the core microbiome across a set of samples.
    Downloads: 0 This Week
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  • 20

    mRIN

    Assessing mRNA integrity directly from RNA-Seq data

    Downloads: 0 This Week
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  • 21

    Excelsi-R

    Excel's Interface to R

    Excelsi-R is an Excel add-in that allows Excel spreadsheets to harness the power of the R statistical language by connecting to a running R process. R does not need to be installed on the computer running Excel, but it does require access to an R instance running Rserve (which can be on a remote computer). It supports incorporating R plots and graphs in an Excel workbook.
    Downloads: 0 This Week
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  • 22
    Downloads: 0 This Week
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  • 23
    This is an R package for the Mass spectrometry Research. The MrR can be used to analyze the mass spectrometry data for baseline correction, denoising, peak detection, peak alignment, peak normalization, and biomarker discovery.
    Downloads: 0 This Week
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  • 24
    ncPRO-seq

    ncPRO-seq

    Non-Coding RNA PROfiling from sRNA-seq

    ncPRO-seq is a tool for annotation and profiling of ncRNAs from smallRNA sequencing data. It aims to interrogate and perform detailed analysis on small RNAs derived from annotated non-coding regions in miRBase, piRBase, Rfam and repeatMasker, and regions defined by users. The ncPRO pipeline also has a module to identify regions significantly enriched with short reads that can not be classified as known ncRNA families. ############# Docker version : download and run Dockerfile (go in...
    Downloads: 3 This Week
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  • 25
    ##### The RKWard project has moved! ##### Find the most recent news and downloads at http://rkward.kde.org . RKWard aims to provide an easily extensible, easy to use IDE/GUI for R. RKWard tries to combine the power of the R-language with the (relative) ease of use of commercial statistics tools.
    Downloads: 1 This Week
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