Search Results for "raw"
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Showing 40 open source projects for "raw"
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AI-generated apps that pass security reviewRetool lets you generate dashboards, admin panels, and workflows directly on your data. Type something like “Build me a revenue dashboard on my Stripe data” and get a working app with security, permissions, and compliance built in from day one. Whether on our cloud or self-hosted, create the internal software your team needs without compromising enterprise standards or control.
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Fully Managed MySQL, PostgreSQL, and SQL ServerCloud SQL handles your database ops end to end, so you can focus on your app.
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CTK
CLIP Tool Kit (CTK)
CTK (CLIP Tool Kit) is a computational biology toolkit implemented in Perl, designed for analyzing CLIP sequencing data. It offers a streamlined pipeline from raw reads through peak calling and motif discovery. -
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Dockside
Develop, stage and test on-prem or in your private cloud
Develop, stage, and test on-prem or in your private cloud. Dockside is a tool for provisioning lightweight access-controlled IDEs, staging environments, and sandboxes - aka 'devtainers' - on local machines, on-premises raw metal or VM, or in the cloud. Dockside is a tool for provisioning lightweight access-controlled IDEs, staging environments and sandboxes - aka devtainers - on the local machines, self-hosted on-premises on bare metal or VM, or in the cloud. By provisioning a devtainer for every fork and branch, Dockside allows collaborative software and product development teams to take lean and iterative development and testing to a highly parallelized extreme. ... -
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exiftool
Read, write and edit metadata
Perl library and command-line application for reading, writing and editing meta information (EXIF, IPTC, XMP, and more) in a wide variety of file formats (JPEG, TIFF, PNG, PDF, RAW, and more). -
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The Sashimi project hosts the Trans-Proteomic Pipeline (TPP), a mature suite of tools for mass-spec (MS, MS/MS) based proteomics: statistical validation, quantitation, visualization, and converters from raw MS data to the open mzML/mzXML formats.
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Go From AI Idea to AI App FastAccess Gemini 3 and 200+ models. Build chatbots, agents, or custom models with built-in monitoring and scaling.
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lm-sensors
lm-sensors repository
...The companion library, libsensors, gives applications a stable API to query sensor values, enabling desktop applets, monitoring daemons, and alerting systems to build on a common foundation. Configuration files map raw chip registers to friendly labels and scaling factors, so outputs reflect real hardware characteristics across many vendors. With this foundation, higher-level tools (like fancontrol or graphical monitors) can automate cooling policies and warn about thermal or power issues before they become failures. -
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Perl Audio Converter
Linux Audio Converter / Tagger / CD Ripper
...It supports the following audio formats: 3G2, 3GP, 8SVX, AAC, AC3, ADTS, AIFF, AL, AMB, AMR, APE, AU, AVR, BONK, CAF, CDR, CVU, DAT, DTS, DVMS, F32, F64, FAP, FLA, FLAC, FSSD, GSRT, HCOM, IMA, IRCAM, LA, MAT, AUD, MAT4, MAT5, M4A, M4R, MP2, MP3, MP4, MP4A, MPC, MPP, NIST, OFF, OFR, OFS, OPUS, OGA,OGG, PAF, PRC, PVF, RA, RAM, RAW, RF64, SD2, SF, SHN, SMP, SND,SOU, SPX, SRN, TAK, TTA, TXW, VOC, VMS, VQF, W64, WAV, WMA, and WV. It can also extract audio from the following video extensions: RM, RV, ASF, DivX, MPG, MKV, MPEG, AVI, MOV, OGM, OGV, QT, VCD, SVCD, M4V, NSV, NUV, PSP, SMK, VOB, FLV, WEBM and WMV. Parallel Processing, a CD ripping function with CDDB support, batch conversion, tag preservation for most supported formats, independent tag reading & writing, service menus for KDE Dolphin/Konqueror, Gnome Nautilus script, and action scripts for Nemo/Thunar are also provided. -
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VecText
Converting text to a structured representation
VecText is an application that converts raw text to a structured format suitable for various data mining software. The application is written in interpreted programming language Perl. A part of the functionality is realized by external modules (e.g., Lingua::Stem::Snowball for stemming). The graphical user interface enables user-friendly software employment without requiring specialized technical skills and knowledge of a particular programming language, names of libraries and their functions, etc. ... -
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ack2 (ack)
ack 2 is no longer being maintained. ack 3 is the latest version
...The tool respects .gitignore and its own ignore mechanisms, and it offers sensible defaults that require minimal flags for day-to-day use. By optimizing for developer workflows rather than raw POSIX compatibility, ack2 helps you navigate large codebases with less typing and less cognitive load. -
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TWiki Enterprise Collaboration Platform
Open Source Enterprise Wiki and Web Application Platform
Enterprise collaboration platform with over 400 extensions. Users without programming skills can create web applications. 50,000 small businesses, many Fortune 500 companies, and millions of people use TWiki, with installations of 100,000s of pages. Visit http://twiki.org/ for the open source TWiki. The TWiki community is focusing on building the best collaboration platform for the workplace. We invite you to GET INVOLVED! More at http://bit.ly/twGetInv. -
Full-stack observability with actually useful AI | Grafana CloudBuilt on open standards like Prometheus and OpenTelemetry, Grafana Cloud includes Kubernetes Monitoring, Application Observability, Incident Response, plus the AI-powered Grafana Assistant. Get started with our generous free tier today.
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miARma-Seq
a A suite designed to study mRNAs, miRNAs and circRNAs
...As a stand-alone tool, is both easy to install and extremely flexible in terms of its use. It brings together well-established software in a single bundle, allowing a complete analysis from raw data. All the capabilities can be easily and simultaneously enabled at will, regardless the step in the workflow. -
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Expose
A simple static site generator for photoessays
...It supports image and video customization through ImageMagick and FFmpeg, enabling batch effects, filters, watermarks, and even video stabilization. With minimal setup, users can transform raw media collections into polished photoessays suitable for personal portfolios, storytelling, or lightweight publishing. -
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Krona
Hierarchical data browser
Krona allows hierarchical data to be explored with zoomable HTML5 pie charts. Krona charts can be created using an Excel template or Krona Tools, which includes support for several bioinformatics tools and raw data formats. -
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ncPRO-seq
Non-Coding RNA PROfiling from sRNA-seq
ncPRO-seq is a tool for annotation and profiling of ncRNAs from smallRNA sequencing data. It aims to interrogate and perform detailed analysis on small RNAs derived from annotated non-coding regions in miRBase, piRBase, Rfam and repeatMasker, and regions defined by users. The ncPRO pipeline also has a module to identify regions significantly enriched with short reads that can not be classified as known ncRNA families. ############# Docker version : download and run Dockerfile (go in... -
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CNVision
CNV prediction from Illumina genotyping data
CNVision is a Perl script that runs Illumina genotyping data (all chips from 300k to latest Omni) through PennCNV, QuantiSNPv2.3 and GNOSIS (an in-built algorithm). It merges the results and assesses the quality of the raw data. CNVision can also identify de novo CNVs in family-based data using a highly accurate algorithm that considers the possibility of CNVs in either parent based on the raw genotyping data. The script is optimized to work in a UNIX-based environment; it should work in Windows, however running the PennCNV component gives errors with the newer versions of PennCNV. ... -
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CIMS
Crosslinking induced mutation site analysis
This package includes the scripts to detect statistically reproducible crosslinking induced mutation sites (CIMS) and cross linking induced truncation sites (CITS) from HITS-CLIP data. References: Moore, M.*, Zhang, C.*, Gantman, E.C., Mele, A., Darnell, J.C., Darnell, R.B. 2014. Mapping Argonaute and conventional RNA-binding protein interactions with RNA at single-nucleotide resolution using HITS-CLIP and CIMS analysis. Nat Protocols, 9:263-293. Zhang,C.†, Darnell, R.B.† 2011.... -
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fastq2vcf
WES analysis pipeline
fasq2vcf is a program that generates an analysis pipeline for Whole Exome Sequencing (WES) projects. It takes the raw reads through to variant calling and annotation. -
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HBSAnalyzer
Aligner and methylation caller for hairpin bisulfite sequencing data
HBS Analyzer is a methylation calling tool for hairpin-bisulfite sequencing data. HBS Analyzer can accept raw hairpin-bisulfite sequencing data in FASTA or FASTQ format, align the paired end reads to the reference genome and call methylation. Given the double stranded nature of the data that is used, HBS analyzer can identify errors caused by PCR and sequencing along with identifying hemi-methylated sites. This error information is also considered while making the methylation call and hence methylation sites introduced by SNPs are also identified along with the known methylation sites in the genome. -
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HBSAnalyzer
Aligner and methylation caller for hairpin bisulfite sequencing data
HBS Analyzer is a methylation calling tool for hairpin-bisulfite sequencing data. HBS Analyzer can accept raw hairpin-bisulfite sequencing data in FASTA or FASTQ format, align the paired end reads to the reference genome and call methylation. Given the double stranded nature of the data that is used, HBS analyzer can identify errors caused by PCR and sequencing along with identifying hemi-methylated sites. This error information is also considered while making the methylation call and hence methylation sites introduced by SNPs are also identified along with the known methylation sites in the genome. -
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Xris Malden Pictures
Perl scripts for image manipulations based on its EXIF metadata
Script Perl pour manipuler des images sur la base de leur métadonnées EXIF ... très utile pour les fichiers images bruts (raw) et en particuliers pour les appareils Nikon (utilisation de la métadonnée ShutterCount d'un appareil Nikon pour le renommage des fichiers) Pré-requis : quelques modules Perl Image::ExifTool, File::Basename and FileHandle 2 applications Mac OS X sont disponibles pour lesquelles les pré-requis sont inclus --- Perl scripts for image manipulations based on its EXIF metadata ... particularly for raw and Nikon raw images requirements : Perl modules Image::ExifTool, File::Basename and FileHandle Mac OS X applications include these requirements -
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git-cal
github like contributions calendar on terminal
...Because it reads local Git metadata, it respects your privacy and can include private work you don’t push to public remotes. For developers who like quick visual feedback in the CLI, git-cal turns raw commit timestamps into an at-a-glance activity portrait. -
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An enterprise-focused NetFlow reporter/analyzer tool featuring clickable graphs, powerful categorization, automatic exporter discovery, and full access to all aspects of the raw flow data (millisecond accuracy, QoS settings, TCP flags, etc).
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RICmerge
Improved Isobaric Label Reporter Ion Assignment
This script and underlying data are in support of the manuscript entitled "Improved reporter ion assignment of raw isobaric stable isotope labeled LC-MALDI-TOF/TOF MS/MS spectral data for quantitative proteomics". Authors: Thomas Jakoby, Andreas Tholey and Bart H.J. van den Berg* * = corresponding author bvdberg@live.com -
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pal_finder is a perl script that finds microsatellite repeat elements directly from raw 454 or Illumina paired-end sequencing reads. It then designs PCR primers to amplify these repeat loci (Potentially Amplifiable Loci: PAL).
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HiC is high-throughput sequencing technology applied to chromatin conformation techniques. This collection of tools stream-lines the processing of HiC data from raw sequence to contact matrices and beyond.
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CNV-WebStore is an integrated platform to analyse, store, visualise and interpret CopyNumber Variation data. Analysis is supported for Illumina data, all CNV-reports and raw data can be imported after third-party analysis. Contact system admin at http://cnv-webstore.uantwerpen.be for installation scripts
