Search Results for "model-builder"
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Showing 96 open source projects for "model-builder"
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Free CRM Software With Something for EveryoneThink CRM software is just about contact management? Think again. HubSpot CRM has free tools for everyone on your team, and it’s 100% free. Here’s how our free CRM solution makes your job easier.
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Bright Data - All in One Platform for Proxies and Web ScrapingBright Data offers the highest quality proxies with automated session management, IP rotation, and advanced web unlocking technology. Enjoy reliable, fast performance with easy integration, a user-friendly dashboard, and enterprise-grade scaling. Powered by ethically-sourced residential IPs for seamless web scraping.
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Anti-Spam SMTP Proxy Server
Anti-Spam SMTP Proxy Server implements multiple spam filters
The Anti-Spam SMTP Proxy (ASSP) Server project aims to create an open source platform-independent SMTP Proxy server which implements auto-whitelists, self learning Hidden-Markov-Model and/or Bayesian, Greylisting, DNSBL, DNSWL, URIBL, SPF, SRS, Backscatter, Virus scanning, attachment blocking, Senderbase and multiple other filter methods. Click 'Files' to download the professional version 2.8.1 build 24261. A linux(ubuntu 20.04 LTS) and a freeBSD 12.2 based ready to run OVA of ASSP V2... -
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Biber is a sophisticated bibliography processing backend for the LaTeX biblatex package. It supports a unsurpassed feature set for automated conformance to complex bibliography style requirements such as labelling, sorting and name handling. It has comprehensive Unicode support.
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memconf - memory configuration on UNIX
Identify sizes of memory modules installed on most UNIX-based systems
Identify sizes of memory modules installed on a Solaris, Linux, FreeBSD or HP-UX workstation or server. memconf reports the size of each SIMM/DIMM memory module installed in a system. It also reports the system type and any empty memory sockets. In verbose mode, it also reports the following information if available: - banner name, model and CPU/system frequencies - address range and bank numbers for each module -
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A multimedia authoring and processing framework and a video playout server for television broadcasting.
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Save hundreds of developer hours with components built for SaaS applications.Whether you want full self-service analytics or simpler multi-tenant security, Qrvey’s embeddable components and scalable data management remove the guess work.
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WACS is a tool for building Adult Web Sites; equally suitable for managing a private collection or building a commercial site. It has many powerful features including dynamic filtering, model catalogs, automatic download and powerful search engine.
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DkIT Bridge Designer
Dundalk Institute of Technology Virtual Bridge Design Competition
The DkIT Bridge Designer will provide you with a realistic introduction to engineering through an authentic, hands-on design experience. This software provides you with the tools to model, test, and optimize a steel highway bridge, based on realistic specifications, constraints, and performance criteria. Supported by Dundalk Insititute of Technology and All-Island Funds, this is a virtual bridge designer that allows kids of all ages learn about engineering and compete with their classmates! -
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Pretty Damn Quick (PDQ) analytically solves queueing network models of computer and manufacturing systems, data networks, etc., written in conventional programming languages. Generic or customized reports of predicted performance measures are output.
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MetaErg
Metagenome Annotation Pipeline
MetaErg is a stand-alone and fully automated metagenome and metaproteome annotation pipeline published at: https://www.frontiersin.org/articles/10.3389/fgene.2019.00999/full. If you are using this pipeline for your work, please cite: Dong X and Strous M (2019) An Integrated Pipeline for Annotation and Visualization of Metagenomic Contigs. Front. Genet. 10:999. doi: 10.3389/fgene.2019.00999 The instructions on configuring and running the MetaErg pipeline is available at GitHub... -
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CvsChangelogBuilder is an utility to generate advanced, differential and/or graphical changelogs, for a project hosted on a CVS server (CVS change log). It provides a better output than the 'cvs log' command, and accept a lot of options.
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Secure remote access solution to your private network, in the cloud or on-prem.OpenVPN is here to bring simple, flexible, and cost-effective secure remote access to companies of all sizes, regardless of where their resources are located.
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PWMScan
A Web-based genome-wide Position Weight Matrix (PWM) Scanner
PWMScan is used to scan a position weight matrix (PWM) against a genome or, in general, a large set of DNA sequences. The PWM is the most commonly used mathematical model to describe the DNA binding specificity of a transcription factor (TF). A PWM contains scores for each base at each position of the binding site. The TF binding score for a given k-mer sequence is then obtained by simply adding up the base-specific scores at respective positions of the binding site. PWMScan takes as input... -
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OpenSource Domain Name Registry Platform
Open-Source Domain Name Registry Platform based on Perl and mod_epp
...: check, info, create, update, delete - Contact commands: check, info, create, update, delete - Session commands: login, logout, hello, poll Uses the 'prepaid' billing model. The EPP Server, gives Registrars the ability to add, modify and delete information associated with domain names, name servers, contacts information on a real-time basis. It is important to note that each Registrar may only effect information about domain names for which it is responsible. mod_epp 1.10 for Apache 2. -
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datasw
datasw, a tool for rapid processing of HPLC-SAXS data.
Small-angle X-ray scattering (SAXS) in solution is a common low-resolution method which can efficiently complement high-resolution information obtained by crystallography or NMR. Sample monodispersity is key to reliable SAXS data interpretation and model building. Beamline setups with inline high-performance liquid chromatography (HPLC) are particularly useful for accurate profiling of heterogeneous samples. The program DATASW performs averaging of individual data frames from HPLC-SAXS... -
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CRISPR-offinder-v1-2
A CRISPR tool for user-defined protospacer adjacent motif
... sites and queries the reference genome as well as a CRISPR system with a defined spacer length and PAM sequence, this standalone tool will identify putative sites and assign a predicted activity based on support vector machine model which conducted by sgRNA Scorer 2.0. In addition, sgRNAs with minimal off-target activity were predicted by Cas-OFFinder, and score with Off-Target Cutting Frequency Determination (CFD). -
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OncoIMPACT
Cancer driver prediction via integrative omics
OncoIMPACT is a model-driven approach to integrate omics profiles (genomics, transcriptomics etc.) and provides patient-specific cancer driver gene predictions. -
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Win32::GUI is a Win32-platform native graphical user interface toolkit for perl. basically, it's an XS implementation of most of the functions found in user32.dll and gdi32.dll, with an object oriented perl interface and an event-based dialog model.
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Hamstr
A tool for directed ortholog search in ESTs and proteins
HaMStR has moved to https://github.com/bionf/hamstr where it is now part of the HaMStR-OneSeq package. HaMStR is a profile hidden Markov model based tool for a directed ortholog search in EST or protein sequence data. The program takes a pre-defined core group of orthologous sequences (core orthologs) and a set of sequences from a search taxon as input. HaMStR then combines in a two-step strategy a pHMM based search and a reverse search via BLAST to extend the core ortholog group with novel... -
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ViralFusionSeq [VFS]
Accurately discover viral integration events and fusion transcripts
.... VFS combines soft-clipping information, read-pair analysis, and targeted de novo assembly to discover and annotate viral-human fusion events. A simple yet effective empirical statistical model is used to evaluate the quality of fusion breakpoints. Minimal user defined parameters are required. Source code with user manual and installation guide of VFS is available at sourceforge's "Files" section. Citation: http://www.ncbi.nlm.nih.gov/pubmed/ -
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MITP
MITP - conserve & novel miRNA identification & target prediction tool
miRNA is a widely known small non-coding RNA which can mediate gene regulation of most important biological processes in plants and animals. Therefore, identification conserve and novel miRNA and their target genes in model and new sequenced species are inevitable. MITP is designed to identify miRNA easily and faster based on sequence mapping result from any mapping software which producing SAM format output result, blast result (default output result) or blat result (default output result... -
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MGSyn
MGSyn - Automatic Synthesis for Industrial Automation
MGSyn (Model, Game, Synthesis) is an open-source tool which integrates game-based synthesis into model-driven development for industrial control and automation. It is served for research and educational purposes. MGSyn has been originally developed by Department of Informatics (Unit 6), TU München and fortiss GmbH and is now maintained by fortiss GmbH. The software is released under the GNU General Public License Version 3.0 (GPLv3). Please download the tutorial for step-by-step... -
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GMOD is a set of interoperable open source software components for visualizing, annotating, and managing biological data. See http://gmod.org for more.
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mCarts
A hidden Markov model to predict clustered RNA motif sites
Many RBPs recognize very short and degenerate sequences, with targeting specificity achieved by mechanisms such as synergistic binding to multiple clustered sites and modulation of site accessibility through different RNA-secondary structures. mCarts integrates the number and spacing of individual motif sites, their accessibility and conservation, which substantially improves signal to noise ratio. This algorithm learns and quantifies rules of these features, taking advantage of a large... -
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TransGeneScan
TransGeneScan is a gene finding tool for metatranscriptomic sequences
NOTE: TransGeneScan is migrated to Github (https://github.com/COL-IU/TransGeneScan). TransGeneScan is no longer maintained in SourceForge. Please find the latest version in Github. TransGeneScan is a gene finding tool for Metatranscriptomic sequences. TransGeneScan incorporates strand-speci c hidden states, representing coding sequences in sense and anti-sense strands on transcripts in a Hidden Markov Model similar to the one used in FragGeneScan (http://fraggenescan.sourceforge.net... -
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Pipeline Builder for NGS tools
Scripting tool for automatize and managing complex NGS analysis
Handling with NGS tool configuration files is a real challenge for modern biologists and biotechnologist. To increase productivity, specificity and enhance the data processing, this tool provides a collection of commands already structured, leading the user in building the correct pipeline for the data he has to analyse. Pipeline Builder is a scripting tool for managing complex NGS analysis pipelines. It helps the user in composing NGS tool commands and composing his own analysis pipeline... -
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Just_Annotate_My_Genome
Comprehensively annotate your non-model species genome.
Uses an existing exonerate output or just predicted proteins (e.g. from Transdecoder or just a FASTA file) to prepare gene prediction inputs for Augustus, SNAP and geneid. Exonerate is run (enabled via AAT) if it is not provided. GTF file is produced to judge quality of annotation. Sorts out high quality alignments from those that don't meet the criteria. -
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miRNA Temporal Analyzer (mirnaTA)
Differential expression analysis tool for miRNAs in temporal studies
..., and the normalized data is analyzed using linear regression model to locate any miRNAs which are differentially expressed in a linear manner. Any miRNAs with P-value<0.05 are considered statistically significant. Remaining miRNAs which did not fit in linear model are further analyzed in two different methods: (1) if the number of time points <3, CDF of the normal distribution, and (2) if the number of time points is >= 3, ANOVA is utilized. http://www.gigasciencejournal.com/content/3/1/20