Search Results for "data processing"
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Showing 59 open source projects for "data processing"
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ModSecurity Nginx Connector
ModSecurity v3 Nginx Connector
ModSecurity-nginx is the connector that embeds the ModSecurity v3 (libmodsecurity) web application firewall engine into NGINX. It integrates WAF processing into the NGINX request/response phases, allowing rules to inspect headers, bodies, and even streaming request data before it reaches upstream apps. Operators can load the OWASP Core Rule Set or custom rules to detect and block common attacks such as SQLi, XSS, RCE patterns, and protocol anomalies. The module exposes directives for enabling audit logging, anomaly scoring, request body buffering limits, and performance tuning to fit high-traffic deployments. ... -
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Perl 5
The Perl programming language
...Development emphasizes robust tests (t/), meticulous changelogs, and tooling like perldoc to keep the language approachable and dependable. In practice, Perl 5 remains a workhorse for sysadmin automation, data munging, web services, and any task where flexible, expressive text handling is paramount. -
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Biber is a sophisticated bibliography processing backend for the LaTeX biblatex package. It supports a unsurpassed feature set for automated conformance to complex bibliography style requirements such as labelling, sorting and name handling. It has comprehensive Unicode support.
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Free DELTA
Software tools for processing taxonomic descriptions in DELTA format
The Free DELTA Project is a free, open-source, software alternative for a generic system to the processing of taxonomic descriptions based on the DELTA (DEscription Language for TAxonomy) format. -
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An innovative Open Source CEP (Complex Event Processing) engine. It implements the event stream processing as a library embeddable in C++ and Perl. You can think of the Complex Event Processing engine as an in-memory database driven by triggers, or a data-flow machine, or a spreadsheet on steroids (and without the GUI part).
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AmberDB - NoSQL database engine in Perl
High-performance, NoSQL engine with transactions for Perl
AmberDB is a high-performance, flat-file NoSQL database engine for Perl built on top of Berkeley DB (DB_File). It combines the speed of flat-file storage with enterprise features: schema-driven multi-dimensional indexing, ACID-compliant transactions with Strict Two-Phase Locking (Strict 2PL), columnar faceted navigation, multilingual locale processing, and native RAM-disk caching. -
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LaTeXML
A TeX and LaTeX to XML/HTML/ePub/MathML translator
LaTeXML is a tool that converts LaTeX documents into structured formats like HTML, MathML, and ePub. Unlike traditional TeX-to-PDF processors, LaTeXML preserves semantic content, making it suitable for web publishing, accessibility, and content reuse. It supports a wide range of LaTeX packages and is designed to enable high-quality rendering of mathematical and scientific documents. -
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LiVES
LiVES is a Video Editing System. It is designed to be simple to use, y
LiVES mixes realtime video performance and non-linear editing in one professional quality application. It is designed to be simple to use, yet powerful. It is small in size, yet it has many advanced features. Using LiVES, you can start editing and making video right away, without having to worry about formats, frame sizes, or framerates. It is a very flexible tool which is used by both professional VJ's and video editors - mix and switch clips from the keyboard, use dozens of realtime... -
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VecText
Converting text to a structured representation
VecText is an application that converts raw text to a structured format suitable for various data mining software. The application is written in interpreted programming language Perl. A part of the functionality is realized by external modules (e.g., Lingua::Stem::Snowball for stemming). The graphical user interface enables user-friendly software employment without requiring specialized technical skills and knowledge of a particular programming language, names of libraries and their... -
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XSH is a powerfull command-line XML editing tool/programming language in the manner of Unix shell interpreters and line-oriented text editors like ed which can be used either interactively or for batch-mode XML processing.
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CSBB-v3.0
CSBB - Computational Suite for Bioinformaticians and Biologists
CSBB is a command line-based bioinformatics suite to analyze biological data acquired through varied avenues of biological experiments. CSBB is implemented in Perl, while it also leverages the use of R, java, python and ruby in background for specific modules. Major focus of CSBB is to allow users from biology and bioinformatics community, to get benefited by performing down-stream analysis tasks while eliminating the need to write programming code. CSBB is currently available on Linux,... -
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Perl Web Scraping Project
Perl Web Scraping Project
...It is a form of copying, in which specific data is gathered and copied from the web, typically into a central local database or spreadsheet, for later retrieval or analysis. Web scraping a web page involves fetching it and extracting from it.[1][2] Fetching is the downloading of a page (which a browser does when you view the page). Therefore, web crawling is a main component of web scraping, to fetch pages for later processing. -
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datasw
datasw, a tool for rapid processing of HPLC-SAXS data.
Small-angle X-ray scattering (SAXS) in solution is a common low-resolution method which can efficiently complement high-resolution information obtained by crystallography or NMR. Sample monodispersity is key to reliable SAXS data interpretation and model building. Beamline setups with inline high-performance liquid chromatography (HPLC) are particularly useful for accurate profiling of heterogeneous samples. The program DATASW performs averaging of individual data frames from HPLC-SAXS... -
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MOIRAI
Simple Scientific Workflow System for CAGE Analysis
...After mapping, a CAGE peak on the genome indicates the position of an active transcriptional start site (TSS) and the number of reads correspond to its expression level. CAGE is prominently used in both the FANTOM and ENCODE project. MOIRAI is a compact yet flexible workflow system designed to carry out the main steps in data processing and analysis of CAGE data. MOIRAI has a graphical interface allowing wet-lab researchers to create, modify and run analysis workflows. Embedded within the workflows are graphical quality control indicators allowing users assess data quality and to quickly spot potential problems. MOIRAI package comes with three main workflows allowing users to map, annotate and perform an expression analysis over multiple samples. -
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ZENBU is a data integration, data processing, and visualization web system based around three main web interfaces : an expression data enhanced genome browser interface, a secured user system for data upload and secured data sharing, and a data explorer interface to find and manipulate data across the many supported experimental data types and to find shared user configurations ZENBU is built as a web2.0 client/server application with javascript web clients and c++ server infrastructure.
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BioC
We describe a simple XML format to share text documents and annotation
A minimalist approach to share text documents and data annotations. Allows a large number of different annotations to be represented. Project files contain: - simple code to hold/read/write data and perform sample processing. - BioC-formatted corpora - BioC tools that work with BioC corpora BioC goals - simplicity - interoperability - broad use - reuse There should be little investment required to learn to use a format or a software module to process that format. ... -
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MARC/Perl
Perl libraries for processing MARC records
MARC/Perl (formerly known as MARC.pm) is a project to develop Perl libraries to process MARC (MAchine Readable Cataloging) data. -
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NGS-TOOLBOX
Handy tools to process/analyze next generation sequencing (NGS) data
The NGS TOOLBOX is a collection of simple open source Perl scripts that perform basic analyses and processing steps using next generation sequencing (NGS) datasets. Each tool is designed to ensure convenient and intuitive usage. Installation and usage does not require any bioinformatics skills. All scripts work out-of-the-box. Advanced users may use the command line based Perl scripts to build automated sequence analyses/processing pipelines. -
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Perl.Colibra
Perl modules for applications development
...Perl.Colibra is a compilation of Perl modules for applications development based on Perl 5 and integrated with jQuery.Colibra, besides of include objects that allow integration with all classes of jQuery.Colibra directly from Perl, this compilation include modules to support the processing and handling of formats data such as XML and date-time among others. All these plugins are separated into classes that can be used separately or together. These classes were built under the Development Standard of the Colibra Project, forming an integral part of this. -
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iMir
Integrated pipeline for HT miRNA-Seq data analysis
Processing of smallRNA-Seq data to gather biologically relevant information requires application of multiple statistical and bioinformatics tools from different sources, each focusing on a specific step of the analysis pipeline. The analytical workflow can be challenging for the continuous interventions by the operator, a critical factor when large numbers of datasets need to be analyzed at once. -
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Pipeline Builder for NGS tools
Scripting tool for automatize and managing complex NGS analysis
Handling with NGS tool configuration files is a real challenge for modern biologists and biotechnologist. To increase productivity, specificity and enhance the data processing, this tool provides a collection of commands already structured, leading the user in building the correct pipeline for the data he has to analyse. Pipeline Builder is a scripting tool for managing complex NGS analysis pipelines. It helps the user in composing NGS tool commands and composing his own analysis pipeline. ... -
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iMS2Flux is a command line based high-throughput processing tool set for stable isotope labelled mass spectral data targeting metabolic flux analysis. To get started simply download and unzip the iMS2Flux.zip file and follow the getting started document for your OS. Current version 7.2.1 (last updated 9/30/2014) - Completes support and correction functionality for a new user specified generic data class.
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allink
Software for data analysis, image processing, simulations, solver.
Collection of utilities based on two basics classes: Matematica and VarData. Matematica) performs math operations on vectors and matrices for smoothing, interpolation, convolution, image processing... VarData) manipulate a structure of points connected by links. Addraw) openGL engine. ElPoly) analyze mechanical properties of polymer and membrane like structures. Addyn) perform molecular dynamics and Monte Carlo simulations and has a solver for 4th oder PDE. Avvis) perform all the operation of Matematica on different sets of data visualized on a Qt graphical interface. ... -
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q pipeline manager
q: integrated platform for pipeline configuration and management
The q utility is a platform for creating and managing data analysis pipelines. It expands the value of your existing job scheduler - either Grid Engine or TORQUE PBS - through numerous functions that help you organize, submit, monitor, manage and share your informatics work. Data processing pipelines require high-level organization and parallelization of work to optimize resource utilization and decrease the time to results. q (from queue) allows complex job sequences to be efficiently assembled and managed, including dependency tracking, parallelization, and pipeline-level monitoring, error recovery, and data protection. ... -
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Opsview is an enterprise grade network, server and application monitoring tool. Features include Nagios® Core compatibility, distributed monitoring, flexible status views, data warehouse and reporting. Software available from: http://opsview.com/downloads
