Search Results for "data processing"

...Development emphasizes robust tests (t/), meticulous changelogs, and tooling like perldoc to keep the language approachable and dependable. In practice, Perl 5 remains a workhorse for sysadmin automation, data munging, web services, and any task where flexible, expressive text handling is paramount.

An innovative Open Source CEP (Complex Event Processing) engine. It implements the event stream processing as a library embeddable in C++ and Perl. You can think of the Complex Event Processing engine as an in-memory database driven by triggers, or a data-flow machine, or a spreadsheet on steroids (and without the GUI part).

CSBB is a command line-based bioinformatics suite to analyze biological data acquired through varied avenues of biological experiments. CSBB is implemented in Perl, while it also leverages the use of R, java, python and ruby in background for specific modules. Major focus of CSBB is to allow users from biology and bioinformatics community, to get benefited by performing down-stream analysis tasks while eliminating the need to write programming code. CSBB is currently available on Linux,...

...Perl.Colibra is a compilation of Perl modules for applications development based on Perl 5 and integrated with jQuery.Colibra, besides of include objects that allow integration with all classes of jQuery.Colibra directly from Perl, this compilation include modules to support the processing and handling of formats data such as XML and date-time among others. All these plugins are separated into classes that can be used separately or together. These classes were built under the Development Standard of the Colibra Project, forming an integral part of this.

Handling with NGS tool configuration files is a real challenge for modern biologists and biotechnologist. To increase productivity, specificity and enhance the data processing, this tool provides a collection of commands already structured, leading the user in building the correct pipeline for the data he has to analyse. Pipeline Builder is a scripting tool for managing complex NGS analysis pipelines. It helps the user in composing NGS tool commands and composing his own analysis pipeline. ...

The q utility is a platform for creating and managing data analysis pipelines. It expands the value of your existing job scheduler - either Grid Engine or TORQUE PBS - through numerous functions that help you organize, submit, monitor, manage and share your informatics work. Data processing pipelines require high-level organization and parallelization of work to optimize resource utilization and decrease the time to results. q (from queue) allows complex job sequences to be efficiently assembled and managed, including dependency tracking, parallelization, and pipeline-level monitoring, error recovery, and data protection. ...

This is a Java-based project for complex event extraction from text and co-reference resolution. Currently the code can read BioNLP shared task format (http://2011.bionlp-st.org/) and i2b2 Natural Language Processing for Clinical Data shared task format (https://www.i2b2.org/NLP/DataSets/Main.php). Event extraction includes finding events and the parameters for an event in a text. The method is based on SVM but other ML algorithms can be adopted. The method details are explained in the following paper: Ehsan Emadzadeh, Azadeh Nikfarjam, and Graciela Gonzalez. 2011. ...

An experimental CEP (Complex Event Processing) engine. It implements the event stream processing as a library embeddable in C++ and Perl. Since then it has been renamed to Triceps, so please look at the new location https://sourceforge.net/projects/t

Generic System for Data Processing

oEdtk is an open source project for automated printing processing. It's a toolkit for building applications that prepare flat file data for massive printing of documents.

The Mediawiki Pipes extension implements external data access and processing through a series of configurable nodes that form a Pipe. The net effect is to create a Wiki based application framework. See http://www.mediawiki.org/wiki/Extension:Pipes

The Simple, Scalable, Script-based Science Processor for Measurements (S4PM) is a system for highly automated processing of science data, scalable up to large processing systems and scalable down to small, special-purpose processing strings.