Search Results for "gnu/linux" - Page 41
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Showing 7986 open source projects for "gnu/linux"
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flickrsync
Command line to to sync photos to Flickr
flickrsync is a command line tool written in Perl that aims to backup a complete directory structure to Flickr. It creates separate albums on Flickr based on the directory structure of the images. The main goal is to upload all pictures without requiring to move them to new folders. It relies on a few Perl packages mainly to handle HTTP requests and the file system. You should create Your own Flickr API keys, authentication token and add them to the application after You have downloaded it. -
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Advanced-Diff is a portable, cross-platform diff utility with advanced features: numerical comparisons, XML comparison, filtering options...
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NG-CloudMS
Next Gen Cloud Management System (NG-CloudMS)
Next Gen Cloud Management System (NG-CloudMS) is a new web based end-to-end OCX management tool that is distributed by Opt/Net under GNU Public License (GPL). This prototype provides near real-time visibility of the networks and cloud infrastructures and interconnected computing and data storage resources. It therefore can assist the operators with visualisation and localization of the causes of potential incidents. -
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katarina is a simple backup system based on rsync, providing guaranteed retention periods, customisable retentions cycles, de-duplication by server...
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fastq2vcf
WES analysis pipeline
fasq2vcf is a program that generates an analysis pipeline for Whole Exome Sequencing (WES) projects. It takes the raw reads through to variant calling and annotation. -
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xen-shell2
simple XEN guests / cloud management console shell
XEN guests / cloud management shell which provides secure, simple and easy (remote, multi-user, multi-level) console based access to XEN DomU management - with simple bandwidth monitoring. -
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AMOS
AMOS is a collection of tools for genome assembly
AMOS is a collection of tools and class interfaces for the assembly of DNA reads. The package includes a robust infrastructure, modular assembly pipelines, and tools for overlapping, consensus generation, contigging, and assembly manipulation. -
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GenoEye
a genome visualization library
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SportsCameraOverlay
Overlay GPS info on videos taken with a sports camera
...A few sample videos: http://www.youtube.com/watch?v=RHWcOntLT5Q http://www.youtube.com/watch?v=HelsKZeIRlM Note: This project is in its infancy and will only work on linux based operating systems without significant code changes. -
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CViT - Chromosome Viewing Tool. A collection of Perl scripts that enable quick visualizations of features on linkage groups, psuedochromosomes or cytogenetic maps. Intended for whole-genome views of data but can be used to create images of single chromosomes/linkage groups, contigs, or BACs, or even proteins -- any feature that has a location on a backbone. Handles most standard genetic/genomic coordinate systems. Reads GFF3 data and produces a PNG or SVG image.
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Perl implentation of rsync that can talk directly to a native rsync program or rsync daemon. The file system I/O is abstracted into a seperate module, which allows an rsync interface to be developed for data other than regular file systems.
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MethylExtract
High-Quality methylation maps and SNV calling from BS-Seq experiments
MethylExtract is a user friendly tool to generate i) high quality, whole genome methylation maps and ii) to detect sequence variation within the same sample preparation. The program is implemented into a single script and takes into account all major error sources: sequencing errors, bisulfite failure, clonal reads and single nucleotide variants. MethylExtract detects variation (SNVs – Single Nucleotide Variation) in a similar way than VarScan, a very sensitive method extensively used in... -
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lightwrapper
Lightweight linux ip v4 traffic accounting system.
Lightwrapper is a small (installation deb less than 50k) linux ip v4 traffic accounting system. It uses netflow for collect network data and provide web gui over modified lightsquid for show statistics and user management. Squid and dig may be connected for more detailed reports. Users may be authenticated with: ip, mac or both ip+mac. You may see live demo by pressing next link: -
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eWamp
A zero install WAMP webserver
A wamp stack webserver that is zero-install and can be implemented on any 32 bit pc in 5 steps or less. It will also run on a 64 bit windows machine. You can also add the zenyan web application framework (Php,Javascript,Jquery,CSS, HTML) to this package: http://sourceforge.net/projects/zenyan/ -
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Web Logbook is an electronic web-based logbook. Main features include single GUI, multi-language, attachments, archives, simple users management, sort, user defined banners, search, import/export, trends and statistics. Good for small to medium teams.
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qos-htb is the easy bandwidth management solution you've been waiting for and graphix makes graphs from which you can see in a second exactly who's eating the bandwidth !
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Filekit
File Processing Tools - string search and DOS command execution
Filekit is a set of file processing GUI tools that can be put into an USB flash, so that no installation is required. Aim of the project is to include many file processing tools such as file searching tool, batch rename file, find duplicate files, split and join files and so on ... Release 0.1.0 consist of the multi-threaded file search tool that allow you to select multiple folders and files, then search those files that contains particular strings using regular expression. Release 2.0... -
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nk23x-stuff
Linux Shell Scripts and Dotfiles, Android Files
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SimpleMap
A tool to streamline high density genetic linkage group constrcution
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CG-Pipeline
A computational genomics pipeline for prokaryotic sequencing projects
This project has moved to Github! However, please see the Sourceforge wiki for any help. https://github.com/lskatz/cg-pipeline http://cg-pipeline.sourceforge.net/wiki/index.php/Main_Page -
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Pipeline Builder for NGS tools
Scripting tool for automatize and managing complex NGS analysis
Handling with NGS tool configuration files is a real challenge for modern biologists and biotechnologist. To increase productivity, specificity and enhance the data processing, this tool provides a collection of commands already structured, leading the user in building the correct pipeline for the data he has to analyse. Pipeline Builder is a scripting tool for managing complex NGS analysis pipelines. It helps the user in composing NGS tool commands and composing his own analysis... -
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AMPPS
AMPPS is a LAMP/MAMP/WAMP stack
AMPPS is a stack of Apache, MySQL, PHP, Perl & Python. AMPPS enables you to focus more on using applications rather than maintaining them. With AMPPS you can create a website by installing any of the 330+ Apps, customizing it, and then simply publishing it on the internet via a wide choice of hosting service providers. A complete package on your desktop, same like the server that provides many open source web applications. Application Management, Domain management, Database management, etc... -
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Device::ISY perl library
Perl llibrary for interacting with UDI ISY controlers
Device::ISY is a perl library and utilities for interacting with the Universal Devices ISY series of home automation controllers. See http://www.universal-devices.com. -
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Just_Annotate_My_Genome
Comprehensively annotate your non-model species genome.
Uses an existing exonerate output or just predicted proteins (e.g. from Transdecoder or just a FASTA file) to prepare gene prediction inputs for Augustus, SNAP and geneid. Exonerate is run (enabled via AAT) if it is not provided. GTF file is produced to judge quality of annotation. Sorts out high quality alignments from those that don't meet the criteria. -
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EplSite ETL
ETL Based on Perl With WEB Interface
EplSite ETL is a tool to do easy the data migrations, doing extraction, transformation, validation and load in a very fast way. It was built by people involved in data migrations so, it contains the necessary to do the migration(Extract Transformation, validation and load) and do it well.
