Search Results for "gnu/linux" - Page 27
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Showing 7986 open source projects for "gnu/linux"
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LOCUST
Custom Sequence Locus Typer
A Custom Sequence Locus Typer for Classifying Microbial Genotypic and Phenotypic Attributes. Publication: Brinkac LM, Beck E, Inman J, Venepally P, Fouts DE, Sutton G. LOCUST: A Custom Sequence Locus Typer for Classifying Microbial Isolates. Bioinformatics (Oxford, England). 2017 Jan 27; https://www.ncbi.nlm.nih.gov/pubmed/28130240 -
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cdu : a color du, disk usage
An unix command line "du" with colors
cdu (for Color du) is a perl script which call du and display a pretty histogram with optional colors which allow to imediatly see the directories which take disk space. With no arguments, cdu reports the disk space for all subdirectories of the current directory. With only one directory argument, cdu reports the disk space for all subdirectories of the given directory. You can also call du with no predefined options. For more documentation about available options, see the manpage below. -
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CABBaGe
Classification Algorithm Based on a Bayesian method for Genomics
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Panacea
PAN And Core-gEnome Analysis
A tool to calculate the Pan-Genome of a set of annotated genomes -
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TekDS820
Drive your obsolete Tek oscilloscope remotely with python
Control a Tek TDS-820 remotely via a GPIB interface using linux-gpib, python, matplotlib and tkinter. The programming manual is used to generate an XML schema which is then used to assist in building extra functionality into the tkinter user interface. -
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SuperDateTime_wu
SuperDateTime Plugin for Squeezebox
SuperDateTime plugin for Squeezebox using wunderground to provide weather data. Modified from Greg Brown's original SuperDateTime plugin to fix and implement wunderground API for stable operation. -
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Simple Movie Catalog will scan a given directory for movies, query imdb for info and generate a catalog in html which offers sorting and grouping of found movies by different criteria. Note: source code has been moved to github: https://github.com/damienlangg/SimpleMovieCatalog
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scalpel
Genetic variants discovery tool
Bioinformatics pipeline for discovery of genetic variants from NGS reads. -
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KB1OIQ - aa-analyzer
RigExpert AA-xxx antenna analyzer data extraction tool
aa-analyzer is a Perl script written by KB1OIQ which collects data from a RigExpert AA-xxx antenna analyzer and outputs it as a CSV file, which can be imported into any spreadsheet program. Please note that this software is distributed within the "Andy's Ham Radio Linux" software collection. -
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PRay
GUI for rayinvr modelling
...B., 1992, Seismic traveltime inversion for 2-D crustal velocity structure, Geophysical Journal International, 108(1), 16--34, 10.1111/j.1365-246X.1992.tb00836.x SYSTEM/USER REQUIREMENTS: - Linux/Mac OS X - You do need to be familiar with command line operations. - a running rayinvr installation DOWNLOAD AND INSTALLATION: Please use the svn repository to download the code: svn checkout svn://svn.code.sf.net/p/pray-plot-rayinvr/code/trunk/ path/to/your/installation To install follow the instructions in the downloaded file 'install.readme' -
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PNP is an addon for the Nagios Network Monitoring System. PNP provides easy to use, easy to configure RRDTools based performance charts feeded by the performance data output of the Nagios Plugins.
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SIMM
SIMM: Simultaneous Identification of Multiple Mutations
SIMM (Simultaneous Identification of Multiple Mutations) pipeline provides a workflow to align the clean reads to reference genome, call SNPs between mutants and reference genome, then genotype the SNPs and identify causal mutations from different mutants simultaneously without the sequencing information of wild-type progenitor. Individuals with mutant homozygous phenotype are bulked and sequenced to >20X, and then analyzed with SIMM to identify causal mutation(s) responsible for the mutant... -
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Shaper Control Tool
Administration tool for Linux-based ISP traffic shaper
Administration tool for Linux-based ISP traffic shaper -
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PanOCT
Pan-genome Ortholog Clustering Tool
PanOCT, Pan-genome Ortholog Clustering Tool, is a program written in PERL for pan-genomic analysis of closely related prokaryotic species or strains. Unlike traditional graph-based ortholog detection programs, it uses micro synteny or conserved gene neighborhood (CGN) in addition to homology to accurately place proteins into orthologous clusters. -
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You can make a simple MSN control (which users can login), web authentication gateway (Horatio based), load balance (iproute2), traffic shape (QoS), simple packet filter and NAT redirects (DNAT), loadbalance and VPN gateway or roadwarrior and ...
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OPTOSS NG-NetMS
OPTOSS Next Gen Network Management System (NG-NetMS)
Why to pay tens of thousands $$$ for your network management software? Get visibility into your networks and complex processes inside with NG-NetMS now! NG-NetMS is a new end-to-end network management platform for your Linux servers, Cisco, Juniper, HP and Extreme routers, switches and firewalls. NG-NetMS is precise, quick and efficient. It collects most complete information about the network inventory, topology, map of IPv4 addresses quickly and with minimum hassle. Most important you will be able to collect, process and analyse Syslog events and SNMP alarms both in near-real-time and from the historical archives in a new way. ... -
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The NT POSIX C Runtime Library is an IEEE standard runtime library for the NT POSIX subsystem. It can be used as a complete replacement or a side by side alternative for what is shipped with the Interix SDK.
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mfsizes
Multi-FASTA sequence (DNA or protein) statistics calculator.
A simple command-line utility to calculate biological sequence (DNA or protein) sizes in a (multi) FASTA file. It gives averages, GC (or methionine) content, N50, N90, N95, number of N's, and total bases, and can also report by codon if requested. -
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GridSheet
Generate your own printable graphing paper
...Other than command-line program, it also come with a CGI front end that can be installed as a web application, allowing intranet users to generate graphing paper from their web browser. GridSheet is written in Perl with no dependency on third-party modules, thus works on any platform with Perl 5.6+ interpreter available, including GNU/Linux, UNIX, Microsoft Windows, and DOS. -
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makepp
GNU make compatible but reliable and simpler build tool
Makepp, a build program which has a number of features that allow for reliable builds and simpler build files, is a drop-in replacement for GNU make. It supports almost all of the syntax that GNU make supports, and can be used with makefiles produced by utilities such as automake. It is called makepp (or make++) because it was designed with special support for C++, which has since been extended to other languages like Swig or embedded SQL. Some features that makepp adds to make are: greatly improved handling of builds that involve multiple makefiles (recursive make is no longer necessary); automatic scanning for include files; rebuild triggered if build command changes; checksum-based signature methods for reliable builds, smart enough to ignore whitespace or comment changes; extensibility through Perl programming (within your makefile); repositories (automatically importing files from another tree); build caches (not recompiling identically what a user of the same cache already did -
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Tools for FPGA development and IP cores. This project provides tools, cores and documentation to develope FPGA applications. The project focuses on VHDL.
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Flame Graphs
Stack trace visualizer
Flame graphs are a visualization of profiled software, allowing the most frequent code-paths to be identified quickly and accurately. They can be generated using my open source programs, which create interactive SVGs. See the Updates section for other implementations. Recently I've been helping with d3-flame-graph. The x-axis shows the stack profile population, sorted alphabetically (it is not the passage of time), and the y-axis shows stack depth, counting from zero at the bottom. Each... -
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Translation team with the primary objective to translate and maintain the translations of some useful SourceForge.net Projects. GUI and CLI applications, PHP, Java and Documentation for Linux, Apple MAC & BSD and Windows. More info on our homepage.
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NOTE: The projects is now being developed here: https://github.com/eugmes/fntsample A program for making font samples that show Unicode coverage of the font and are similar in appearance to Unicode charts. Samples can be saved as PDF or PostScript files.
