Search Results for "linux command" - Page 17

Showing 1524 open source projects for "linux command"

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  • 1
    A collection of software made by Milos Rancic.
    Downloads: 0 This Week
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  • 2

    basecv

    BCV is DNA base caller with vocabulary

    The Base Calling with Vocabulary (BCV) software package is intended for analysis of direct (population) sequencing chromatograms using known vocabulary sequences similar to the target DNA. The current version of BCV can only process chromatogram files obtained on Applied Biosystems capillary sequencing machines (ABIF file format).
    Downloads: 0 This Week
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  • 3
    gitslave

    gitslave

    Coordinated multi-repository super-projects for Git

    Gitslave is a script for coordinated version control of large projects combining code from multiple independent repositories using Git. More flexible than traditional git submodules, gitslave provides a simple wrapper around command-line git that manages a directory tree with multiple subsidiary ("slave") git repositories in sub-directories of a "master" git repository. Any git command run from the "gits" wrapper will be performed in all the git repositories; for example gits checkout -b...
    Downloads: 5 This Week
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  • 4
    msBayes allows complex and flexible phylogeographic inference. More specifically, you can test the simultaneous divergence (TSD) of multiple population (species) pairs. It uses approximate Bayesian computation (ABC) under a hierarchical model.
    Downloads: 0 This Week
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  • 5
    Do you drive on the Massachusetts Turnpike? Do you have a Fast Lane account? Do you save your gas receipts? If you've answered yes to all of the aforementioned questions, you may be eligible for a rebate! Visit this project's Web site for details. The official source repository is located at https://github.com/textbrowser.
    Downloads: 0 This Week
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  • 6

    Braille Alphabet Generator

    An automated way to generate all braille characters

    This project generates all possible braille characters. The characters are generated as image files. User can fully customize the look and feel of the images including their format type. The characters are language independent (i.e., they are not tied to the language the Braille coding is representing) nor are they tied to any Grade level of Braille system.
    Downloads: 0 This Week
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  • 7

    Value Change Dump to Text File Converter

    Converts value change dump files to a plain-text table.

    Vcd2txt is an utility to parse value change dump (VCD) files and convert them to an easily readable (plain-text) table of signals. In contrast to GTKwave, simulation of hardware circuits can be performed fully on the command line.
    Downloads: 0 This Week
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  • 8
    DeconSeq
    The DeconSeq tool can be used to automatically detect and efficiently remove sequence contamination from genomic and metagenomic datasets. It is easily configurable and provides a user-friendly interface. More at http://deconseq.sourceforge.net
    Downloads: 2 This Week
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  • 9

    Automatic Compound Processing (AuCoPro)

    Automatic compound splitting and semantic analysis of compounds

    The central problem to be addressed in this project concerns a multidisciplinary (linguistics and computational linguistics) investigation into sharing of knowledge and resources between closely-related languages, specifically relating to the automatic processing of compounds. Specifically, we will explore the possibility to create new knowledge about closely-related languages, and efficiently develop additional, more advanced resources for (a) compound segmentation; and (b) the semantic...
    Downloads: 4 This Week
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  • 10

    catch-http

    Captures and extracts HTTP connections

    Perl script for capture HTTP conections and extract the transmited files. Uses libmp3-tag-perl and tcpflow.
    Downloads: 0 This Week
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  • 11
    RCDP - Network Mapper

    RCDP - Network Mapper

    Recursive mapping/discovery of network devices via CDP/OSPF

    CLI based, recursive mapping/discovery of network devices via SNMP(CDP/OSPF/BGP MIBs). SNMP(LLDP MIBs), telnet, and SSH are to follow, along with multi-vendor support (right now only supports cisco devices). Requires Perl and Net::SNMP, Net::SSH, and Net::Telnet modules.
    Downloads: 0 This Week
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  • 12

    timeout

    run a command with a time limit

    Start COMMAND, and kill it if still running after DURATION. Based on GNU timeout from coreutils. Ported to Perl so it is available also for other Unix systems. Was tested on Linux and FreeBSD.
    Downloads: 0 This Week
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  • 13
    Subcheck is a Perl script which checks srt subtitle files for errors. Such as overlapping, negative duration, to short displaytime, rewrite subtitle lines with another character length (useful for hardware divxplayers), etc. It is highly configurable.
    Downloads: 0 This Week
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  • 14
    Designed to use what is known about users via the /etc/passwd file on unix/linux systems to generate a dynamic dictionary or csv file of more accurate guesses as to what their possible password may be, to look for bad password protection practices.
    Downloads: 0 This Week
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  • 15
    BODE: Bioinformatics ODds and Ends
    A collection of bioinformatics-related software created by members of Cancer Research UK (possibly among others).
    Downloads: 0 This Week
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  • 16

    SSH Access Manager

    SSH Key Management solution

    SSH Access Manager is a comprehensive access security management platform that permits IT professionals to easily establish and maintain an enterprise-wide SSH access security solution from a central location. It enables a team of system administrators to centrally manage and deploy ssh keys. This app is intended to be used in rather large environnements where access to unix accounts are handled with ssh keys. SSH Access Manager allows you to maintain user public keys. You can organise...
    Downloads: 0 This Week
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  • 17

    ADM to GPX

    Convert a Garmin ADM database file to a GPX file

    User data exported from later model Garmin GPSmap marine GPS sets consists of ADM files written to a VFAT-formatted SD card. This data includes user-generated waypoints and routes, and recorded GPS tracks. adm2gpx converts this data to industry-standard GPX records that may be imported into third-party mapping and GPS software.
    Downloads: 0 This Week
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  • 18
    RSS Feed Reader, for use in a crontab, to monitor, download and copy podcasts to an IPOD or other MP3 Player. To copy the files to an IPOD it requires GNUPod be installed.
    Downloads: 0 This Week
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  • 19
    git-cal

    git-cal

    github like contributions calendar on terminal

    git-cal generates a terminal-friendly contribution calendar for your Git activity, echoing the familiar heatmap seen on hosting sites but rendered in plain text. It scans your repositories’ commit history and aggregates changes per day, then prints a compact grid that highlights streaks and quieter periods. The output works in standard shells, making it handy for dashboards, status emails, or a lightweight snapshot of productivity without opening a browser. Options typically let you choose...
    Downloads: 0 This Week
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  • 20

    git-info-bar

    Git shell plugin offering a highly pronounced view to git information

    ...Please see the license under source/git-info-bar. Keywords: gitbash git-bash git bash bashgit bash-git bash git gitksh git-ksh git ksh kshgit ksh-git ksh git git shell plugin git shell integration; Linux FreeBSD Windows Last Change: 2013-12-10 - v1.2.0 - Bug fix. No longer complains about stash command when under the .git directory, namely 'fatal: /usr/lib/git-core/git-stash cannot be used without a ...
    Downloads: 0 This Week
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  • 21

    AutoMap

    AutoMap is a tool for structural biology and drug design.

    AutoMap takes a series of poses obtained from molecular docking and applies the site, epitope and conformational mapping techniques to the poses to select likely ligand binding modes.
    Downloads: 0 This Week
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  • 22
    Bioinformatic tools for analyzing an orfeome using translated ORFs and compares each ORF to the provided Orfeome/Proteome. Our script uses NCBI BLAST run locally and MySQL as the main engines in a new and interisting way. It is designed specifically for Poxvirus genomes, and provides the VACV-COP nomenclature and Cowpox Ortholog groups per each ORF. The BLAST stats are generated when compared to the Proteome you provide. It can be easily adapted for other genomes.
    Downloads: 0 This Week
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  • 23
    Proxyp

    Proxyp

    Multithreaded Proxy Enumeration Utility

    Proxyp is a small multithreaded Perl script written to enumerate latency, port numbers, server names, & geolocations of proxy IP addresses. This script started as a way to speed up use of proxychains, which is why I've added an append option for resulting live IP addresses to be placed at the end of a file if need be. Requires IP::Country module and root/administrator privileges. "No man is free who is not master of himself" --Epictetus "For a man to conquer himself is the first...
    Downloads: 0 This Week
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  • 24
    PRINSEQ
    A bioinformatics tool to PRe-process and show INformation of SEQuence data. The tool is written in Perl and can be helpful if you want to filter, reformat, or trim your sequence data. It also generates basic statistics for your sequences.
    Downloads: 15 This Week
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  • 25

    RemoteRoot

    Web based management tool for unixes

    Remote Root is an enterprise-class central management tool for Linux, which enables centralized configuration management of a large amount of network connected Linux-based computers (hosts) in a modular form. It is an open source software system relying on operation of traditional operating systems, so it is capable of managing numerous free and commercial Linux distributions or even not Linux-like systems (such as Solaris, HP-UX, FreeBSD, OpenBSD). It can manage every system on which the...
    Downloads: 0 This Week
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