MyOrfeome

Features

• Version 2.1: Check for NCBI BLAST somewhere in the path before running.
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• Written in bash, perl
• Can run in linux, Mac OS, or Cygwin environment (Windows).
• Uses MySQL database to generate tables.
• Open Source, under the BSD Licence
• Writen for comparative Poxvirus genomics, but can me adapted for other species.
• Required Software: Pearl, Mysql, Linux, BLAST.
• Future version: generate Feature table for Genbank submission
• Visit our website for latest version.
• Version 2.0: Several bugs corrected. The script copies the default proteome sujects into your working directory. Creates the working directory and verify that your input fasta files exists. Known bugs: fasta files descriptor should not contain special characters such as: !@#$%^&*()_
• Version 1.2 - New things in this version: - Some bugs fixed. - Create output folder automatically. - Check for DB user and password. - Add some comments when running the script. - MOCV proteome included.
• Known bugs: Mysql in Cygwin does not find files. Does not check if fasta files contains only protein seq.

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