Search Results for "linux command" - Page 10
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Showing 1524 open source projects for "linux command"
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Go from Code to Production URL in SecondsSkip the Kubernetes configs. Cloud Run handles HTTPS, scaling, and infrastructure automatically. Two million requests free per month.
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99.99% Uptime for MySQL and PostgreSQL DatabasesCloud SQL Enterprise Plus delivers near-zero downtime with 35 days of point-in-time recovery. Supports MySQL, PostgreSQL, and SQL Server.
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rpmorphan
List packages that have no dependencies (like deborphan)
rpmorphan finds "orphaned" packages on your system (packages which have no other packages depending on their installation). A console and graphical interface is provided. It is a clone of deborphan debian software. It provides also some others rpm tools (rpmusage, rpmdep, rpmduplicates, rpmextra) -
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bspipe
An End-to-End Analysis Pipeline for BS-seq
BSpipe is a comprehensive pipeline from sequence quality control and mapping to functional analysis of differentially methylated regions: (1) sequencing quality assessment, (2) sequence cleaning, (3) sequence read mapping, (4) methylation quantification, (4) sample comparisons based on methylation profile, (5) identification of DMRs (differentially methylated regions), (6) annotation of DMRs, (7) functional analysis of differentially methylated genes, (8) generation of input files... -
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Meraculous-2D
Eukaryotic Genome Assembler
---------------------------------------- IMPORTANT: Meraculous-2D has been superseded by the HipMer assembler, available here: https://sourceforge.net/projects/hipmer/ ----------------------------------------- Meraculous-2D is a whole genome assembler for NGS reads (Illumina) that is capable of assembling large, diploid genomes with modest computational requirements. Features include: - Efficient k-mer counting and deBruijn graph traversal - Two modes of handling of diploid... -
$300 Free Credits to Build on Google CloudStart your next project with $300 in free Google Cloud credit. Spin up VMs, run containers, query petabytes in BigQuery, or build agents with Gemini Enterprise Agent Platform. Once your credits are used, keep building with 20+ always-free tier products including Compute Engine, Cloud Storage, GKE, and Cloud Run functions. No commitment required—just sign up and start building.
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cado
Template-based code generation language.
Cado is a mature code generation language that operates on standard templates with embedded macros. It is useful for generating source code and other related content (tests, docs, configuations, etc.), deriving from a common project nomenclature. -
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Sagacity
Security Assessment Data Management and Analysis Tool
We have migrated development of Sagacity to GitHub at https://github.com/cyberperspectives/sagacity Sagacity is a vulnerability assessment and STIG compliance data management tool designed to make security testing more efficient, effective and complete. Security assessments, especially those done for DoD and Federal organizations, produce tremendous amounts of scan and compliance data that security engineers must sort through and deconflict, identify untested requirements, and somehow... -
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Tentacle is a cross-platform file transfer protocol that aims to be secure and easy to use. The client and server are designed to be run from the command line or called from a shell script. Secure file transfers to and from the server are supported.
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As of 2018-06-28, this project has moved to https://github.com/AdamaJava. This copy of the code will remain but all new code updates and releases will be from the new site. Java code developed by the Australian ICGC team for operating on next-generation sequencing data. This code is currently being maintained and expanded by the QIMR Berghofer Genome Informatics team (http://www.qimrberghofer.edu.au/lab/genome-informatics/) More details and documentation can be found on the...
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Simple Keyring In Perl (Skip)
Skip is a lightweight and portable tool for managing/using secrets
Skip is a lightweight and portable tool for managing secrets such as login passwords and easily automating the programs that use them without leaving the secrets unencrypted on disk. Skip has been tested successfully with several common programs including fetchmail, getmail, msmtp, scp, ssh, and ssh-add without the need for any modification on Linux, OSX, and Windows under Cygwin. -
Build Agents and Models on One PlatformGemini Enterprise Agent Platform is Google Cloud's comprehensive platform for developers to build, scale, govern, and optimize agents and models. Choose from Google's most advanced models and third-party models like Anthropic's Claude Model Family.
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Remote backup tools with Backup generation management, save disk space, filesystem transparent operation based on rsync protocol.
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CSBB-v2.1 [CSBB-v3.0 is now available]
Computational Suite For Bioinformaticians and Biologists
...CSBB is currently available on Linux, UNIX and Windows platforms. Currently CSBB provides 17 modules focused on analytical tasks like normalization, visualization, statistics, RNA-SEQ etc. -
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CSBB-v3.0
CSBB - Computational Suite for Bioinformaticians and Biologists
...CSBB is currently available on Linux, UNIX. Currently CSBB provides 18 modules focused on analytical tasks like performing upper-quantile normalization, interactive visualization and next generation sequencing pipelines. CSBB now also has capability to process public data. Providing User with End to End pipeline experience. -
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Audit Test Project
Test suite for Linux audit and related security functionality
audit-test is a test suite designed to provide automated testing for the light-weight audit framework that first appeared in the 2.6.4 kernel. It has been used regularly since RHEL4 and has most recently been updated for RHEL6.3 and SLES11. The test suite now covers functionality beyond audit and includes the automated tests required for the BSI OSPP, including labeled security and virtualization. -
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owfs and owhttpd
Project moved to https://github.com/owfs/owfs/
Please note that OWFS source code, and all Issue/Tickets/merge requests have now been moved to https://github.com/owfs/owfs/. Developer mailing lists will still be kept at Sourceforge. ---- OWFS -- 1-Wire file system. Use the Dallas 1-Wire and iButton chips with standard filesystem commands. Create temperature loggers. Monitor everything. OWHTTPD -- same system, only used as a light weight web server. OWFS is also ported to embedded routers, Mac OSX and Windows. Basically you can use... -
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maff-viewer
Viewer / Extractor for compressed HTML in the Mozilla Archive Format
Viewer / Extractor for compressed HTML in the Mozilla Archive Format (*.maff file) Maff-viewer works fully offline and uses your prefered browser to display the extracted maff-file content. For details see https://sourceforge.net/projects/maff-viewer/files/Maff-Viewer_Doku.pdf/download -
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BisSNP
Bisulfite-seq/NOMe-seq SNPs & cytosine methylation caller
Now in Github: https://github.com/dnaase/Bis-tools/tree/master/Bis-SNP BisSNP is a package based on the Genome Analysis Toolkit (GATK) map-reduce framework for genotyping in bisulfite treated massively parallel sequencing (Bisulfite-seq, NOMe-seq and RRBS) on Illumina platform. It uses bayesian inference with either manually specified or automatically estimated methylation probabilities of different cytosine context(not only CpG, CHH, CHG in Bisulfite-seq, but also GCH et.al. in other... -
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CABBaGe
Classification Algorithm Based on a Bayesian method for Genomics
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Panacea
PAN And Core-gEnome Analysis
A tool to calculate the Pan-Genome of a set of annotated genomes -
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scalpel
Genetic variants discovery tool
Bioinformatics pipeline for discovery of genetic variants from NGS reads. -
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Simple Movie Catalog will scan a given directory for movies, query imdb for info and generate a catalog in html which offers sorting and grouping of found movies by different criteria. Note: source code has been moved to github: https://github.com/damienlangg/SimpleMovieCatalog
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cdu : a color du, disk usage
An unix command line "du" with colors
cdu (for Color du) is a perl script which call du and display a pretty histogram with optional colors which allow to imediatly see the directories which take disk space. With no arguments, cdu reports the disk space for all subdirectories of the current directory. With only one directory argument, cdu reports the disk space for all subdirectories of the given directory. You can also call du with no predefined options. For more documentation about available options, see the manpage below. -
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KB1OIQ - aa-analyzer
RigExpert AA-xxx antenna analyzer data extraction tool
aa-analyzer is a Perl script written by KB1OIQ which collects data from a RigExpert AA-xxx antenna analyzer and outputs it as a CSV file, which can be imported into any spreadsheet program. Please note that this software is distributed within the "Andy's Ham Radio Linux" software collection. -
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PRay
GUI for rayinvr modelling
...B., 1992, Seismic traveltime inversion for 2-D crustal velocity structure, Geophysical Journal International, 108(1), 16--34, 10.1111/j.1365-246X.1992.tb00836.x SYSTEM/USER REQUIREMENTS: - Linux/Mac OS X - You do need to be familiar with command line operations. - a running rayinvr installation DOWNLOAD AND INSTALLATION: Please use the svn repository to download the code: svn checkout svn://svn.code.sf.net/p/pray-plot-rayinvr/code/trunk/ path/to/your/installation To install follow the instructions in the downloaded file 'install.readme' -
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Shaper Control Tool
Administration tool for Linux-based ISP traffic shaper
Administration tool for Linux-based ISP traffic shaper
