Showing 18 open source projects for "basic linux"

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  • 1

    MAGeCK

    Model-based Analysis of Genome-wide CRISPR-Cas9 Knockout

    Model-based Analysis of Genome-wide CRISPR-Cas9 Knockout (MAGeCK) is a computational tool to identify important genes from the recent genome-scale CRISPR-Cas9 knockout screens technology. For instructions and documentations, please refer to the wiki page. MAGeCK is developed by Wei Li and Han Xu from Dr. Xiaole Shirley Liu's lab at Dana-Farber Cancer Institute/Harvard School of Public Health, and is maintained by Wei Li lab at Children's National Medical Center. We thank the support...
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    Downloads: 72 This Week
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  • 2
    Pydicom by examples

    Pydicom by examples

    Basic and intermediate examples of DICOM library with Jupyter

    Basic and intermediate examples to read, modify and write DICOM files with Python code using Jupyter - To install Jupyter - https://jupyter.org/install ====== All examples are based on Pydicom. An open source library - https://pydicom.github.io/
    Downloads: 1 This Week
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  • 3
    Vital Sign Simulator

    Vital Sign Simulator

    Patient vital sign simulator for medical emergency training purposes

    The vital sign simulator simulates a patient monitor and is intended for use in medical emergency training simulations. In combination with a (cheap) cpr-manikin, it offers a low-cost alternative to commercial high-tech patient simulation manikins. It is used with a dual monitor system, one monitor with controls for the operator and one providing the vital signs to the trainees. Heart rate, oxygen saturation, etCO2, respiratory rate, blood pressure and various moving ecg-samples can be set...
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    Downloads: 47 This Week
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  • 4
    Gimias

    Gimias

    Graphical Interface for Medical Image Analysis and Simulation

    GIMIAS is a workflow-oriented environment for solving advanced biomedical image computing and individualized simulation problems, which is extensible through the development of problem-specific plug-ins. In addition, GIMIAS provides an open source framework for efficient development of research and clinical software prototypes integrating contributions from the Physiome community while allowing business-friendly technology transfer and commercial product development.
    Downloads: 0 This Week
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  • 5
    CanReg5 (moved to Github)

    CanReg5 (moved to Github)

    Canreg5 is a software package for population based cancer registries

    Cancer registries need a tool to input, store, check and analyse their data. If these data are also coded and verified in a standard way, it facilitates the production of comparable analyses across registry populations. The main goal of the CanReg5 project is to provide a flexible and easy to use tool to accomplish these objectives. CanReg5 is a multi user, multi platform, open source tool to input, store, check and analyse cancer registry data. It has modules to do: data entry,...
    Downloads: 1 This Week
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  • 6
    simECG is an ECG signal simulator aimed for basic training and experimenting. As a full software ECG signal generator, it's ideal for training and demonstration purposes. You can create customizable signals usually present in many pathologies.
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    Downloads: 19 This Week
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  • 7
    This software gives you at the moment what means any of that blood or urine analyses you do by telling what diseases are associated to high or low values. It's only for educational purposes!
    Downloads: 0 This Week
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  • 8

    CoVEC

    Consensus Variant Effect Classification

    The package provides SVM models to be used with SVMlight (http://svmlight.joachims.org/) for drawing a consensus out of individual 3rd-party predictions about the effect of mutations. The 3rd party tools are SIFT, Polyphen2, SNPs&GO and Mutation Assessor. The package also provides a series of Perl modules and scripts to assist in the preparation of data. The modules can be used to build custom tools and pipelines, whereas the scripts provide basic executable implementations based on the...
    Downloads: 0 This Week
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  • 9
    Intelligent e-knowledge base engine for any kind of knowledge-based applications, supporting effective knowledge presentation, precise knowledge search, adaptive learning and immediate consulting.
    Downloads: 0 This Week
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  • 10
    radlab

    radlab

    Virtual Radiation Detection and Measurement Laboratory Software

    Radiation detection and measurement education is necessary for a wide variety of people working with radiation. The equipment and laboratory setup needed for delivering this education are expensive and difficult to assemble due to the large variety of the type of experiments that are desirable to cover. For a basic education one needs to have gamma, beta, alpha and neutron sources, at least one detector to detect each type of radiation and other supplemental instrumentation to perform...
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    Downloads: 11 This Week
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  • 11
    MEDILIG - Medical Life-Guard

    MEDILIG - Medical Life-Guard

    EHR/EMR cross-platform electronic medical record application

    EHR/EMR cross-platform software for the design, implementation and use of autonomous, open, database models for multilingual medical knowledge management systems from primary care to continuing care.
    Downloads: 0 This Week
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  • 12
    This toolkit allows complete control of a microscopy setup from Labview, Matlab, Scilab, Python, .Net, VB, IgorPro, Mathematica and more. Included is a standalone program for image acquisition and scripting control of a scientific microscope.
    Downloads: 0 This Week
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  • 13
    A suite of basic image processing applets for typical Nuclear Medicine studies.
    Downloads: 0 This Week
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  • 14
    iMEDgine is a software that allows visualization and manipulation of medical 3D image data. The software itself provides the GUI, basic manipulation functionality and interfaces to algorithms as implemented in ITK.
    Downloads: 0 This Week
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  • 15
    A Medical Information System (MIS) Application Server based on Web Services and J2EE and administrative tools (Plugins for Eclipse,...)
    Downloads: 0 This Week
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  • 16
    ImLib3D is a C++ library and visualisation system for 3D image processing. It contains most basic image processing algorithms, and some more sophisticated ones. ImLib3D images are STL-compliant templated containers. Keywords: Medical, MRI, Brain
    Downloads: 0 This Week
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  • 17
    NAMD Log Parser sorts through the log file generated by NAMD and extracts energy information to export to a graphing program or used in the basic graph provided.
    Downloads: 0 This Week
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  • 18
    this java project creates a simple user interface with some basic statistical tools to access the Eye Express(tm) Eye tracker hardware. Including serial port access, etc.
    Downloads: 0 This Week
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