Open Source C Medical Software

A programmable audio generator intended as an aural aid to meditation, implementing the binaural beat principle as described in Gerald Oster's Oct. 1973 Scientific American article "Auditory Beats in the Brain."

BioSig is a software library for processing of biomedical signals (EEG, ECG, etc.) with Matlab, Octave, C/C++ and Python. About 50 different data formats are supported.

Amide's a Medical Image Data Examiner: Amide is a tool for viewing, registering, and analyzing anatomical and functional volumetric medical imaging data sets.

a medical image conversion utility & library; hereby hoping to lower at least one barrier in medical research projects.

MAGeCK2 is here: https://github.com/davidliwei/mageck2 Model-based Analysis of Genome-wide CRISPR-Cas9 Knockout (MAGeCK) is a computational tool to identify important genes from the recent genome-scale CRISPR-Cas9 knockout screens technology. For instructions and documentations, please refer to the wiki page. MAGeCK is developed by Wei Li and Han Xu from Dr. Xiaole Shirley Liu's lab at Dana-Farber Cancer Institute/Harvard School of Public Health, and is maintained by Wei Li lab at Children's National Medical Center. We thank the support from Claudia Adams Barr Program in Innovative Basic Cancer Research and NIH/NHGRI to develop MAGeCK.

MCX is a GPU-accelerated, general-purpose, physically-accurate and feature-rich 3-D light transport simulator. It is one of the fastest simulators because it can use tens of thousands of GPU threads to simulate photons in parallel.

A Sequenced Binaural Wave Generator for Linux+Windows. May be used to generate sounds that entrain the brain's waves to oscillate at selected frequencies to aid in relaxation, lucid dreaming, meditation, clear thought, out-of-body experiences + more

This project, initially developed at University College London, contains programs to perform rigid, affine and non-linear registration of nifti or analyse images. Two versions of the algorithms are included, a CPU- and a GPU- (using CUDA) based implementation.

NEW V3 version with RTC and buzzer (require V3+ ECG Logger Viewer application) The ECG Logger project is a Wearable Cardio Monitor for Long-Term (up to 24h) ECG Data Acquisition and Analysis (aka Holter) with an ECG live (real-time) mode. This project provides a very low-cost open-source "Hardware and Software" for a Cardiac Rhythmic Holter. The hardware has been made very simple and is based on an Arduino Nano micro-controller with boards for SD card mass-storage, instrumentation differential amplifier and RTC. It can help monitoring arrhythmia syndromes such as bradycardia, tachycardia, extra-systoles, pause or flutter. WARNING: In no case it can be use to replace a professional medical examination. Device MUST NOT BE CONNECTED to appliance powered by mains - risk of electrical shocks ************************************************************************************** see also: ECG Logger Viewer application : https://sourceforge.net/projects/ecg-logger-viewer/

niftilib is a collection of i/o routines for the nifti1 neuroimage data format. C (nifticlib), Java (niftijlib), Matlab (niftimatlib), and Python (pynifti) code is available. For nifti format info see: http://nifti.nimh.nih.gov/

The project has moved to GitHub: https://github.com/pixmeo/osirix

The MRiLab project is moving to GitHub, the latest version can be obtained from https://leoliuf.github.io/MRiLab/ The MRiLab is a numerical MRI simulation package. It has been developed and optimized to simulate MR signal formation, k-space acquisition and MR image reconstruction. MRiLab provides several dedicated toolboxes to analyze RF pulse, design MR sequence, configure multiple transmitting and receiving coils, investigate magnetic field related properties and evaluate real-time imaging technique. The main MRiLab simulation platform combined with those toolboxes can be applied to customize various virtual MR experiments which can serve as a prior stage for prototyping and testing new MR technique and application. If you find MRiLab useful for your work, please cite this paper: Fast Realistic MRI Simulations Based on Generalized Multi-Pool Exchange Tissue Model. IEEE Transactions on Medical Imaging. 2016. doi: 10.1109/TMI.2016.2620961

Software development in support of restoring MNG/JNG support to Mozilla, and hosting of MNG/JNG-supporting executable versions of Mozilla and Mozilla-Firebird.

SeaBreeze is a device driver library that provides an interface to select Ocean Optics spectrometers. It is written in C/C++ and builds and runs on Windows (XP/7/8), MacOSX, and Linux (x86/x64/ARM).

This is a sophisticated & integrated simulation and analysis environment for dynamical systems models of physical systems (ODEs, DAEs, maps, and hybrid systems). It supports symbolic math, optimization, continuation, data analysis, biological apps...

Working hardware has been built and is in a late beta stage. Software is also available.

Stochastic simulator for signaling pathways occuring in biological cells. Handles reaction-diffusion processes in 3D tetrahedral meshes. Please check our new repository: https://github.com/CNS-OIST/STEPS

This project, developed at UCL London, provides code for tomographic reconstruction. NiftyRec is written in C and has Python and Matlab extensions. Computationally intensive functions have a GPU accelerated version based on CUDA.

The Development System for Auditory Modelling (DSAM) is a computational library designed specifically for producing simulations of the auditory system. It brings together many established auditory models within a flexible programming platform.

This Ethernet sniffer was designed to work together with the medical device for EEG acquisition BrainNet36® (BNT36), from EMSA Equipamentos Médicos Ltda. BrainNet36® has 36 channels, A/D converters with 16 bit accuracy, conversion time of 10 µs and Ethernet communication interface. Being a device for clinical purposes, BrainNet36® does not export data online. This sniffer was developed to allow online processing by working in promiscuous mode and recording data in a plain text file.

BioEra is DSP visual designer that can be used to create interfaces between human being and a machine with using bio signals like EEG, QEEG, HEG, EMG, ECG, GSR, EOG, visual/sound entrainment and others.

Research code for continuous 3D medial modeling targeted towards anatomical objects. Includes an OpenGL viewer and individual and population-based model fitting tools.

CamBA is a Linux package for statistical analysis, by script/GUI, of neuroimaging data (fMRI/sMRI), developed at the Brain Mapping Unit, University of Cambridge. Non-parametric permutation-based statistics. Input images: 4D NiFTI files, output: HTML/

This is the MIR implementation of DICOM services that was started by MIR and the RSNA in 1992.

PELCO-PTZ provides a command line RS232 driver for controlling Pelco Inc., surveillance cameras that have RS422/485 inputs. This driver implements the Pelco 'P' protocol used to control such devices. The command line interfaces supports all aspects of