Showing 107 open source projects for "use"

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  • 1

    BBMap

    BBMap short read aligner, and other bioinformatic tools.

    This package includes BBMap, a short read aligner, as well as various other bioinformatic tools. It is written in pure Java, can run on any platform, and has no dependencies other than Java being installed (compiled for Java 6 and higher). All tools are efficient and multithreaded. BBMap: Short read aligner for DNA and RNA-seq data. Capable of handling arbitrarily large genomes with millions of scaffolds. Handles Illumina, PacBio, 454, and other reads; very high sensitivity and...
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    Downloads: 388 This Week
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  • 2
    Monte Carlo eXtreme (MCX)

    Monte Carlo eXtreme (MCX)

    Physically accurate and validated GPU ray-tracer

    MCX is a GPU-accelerated, general-purpose, physically-accurate and feature-rich 3-D light transport simulator. It is one of the fastest simulators because it can use tens of thousands of GPU threads to simulate photons in parallel.
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    Downloads: 72 This Week
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  • 3
    CleverPsych  Practice Management

    CleverPsych Practice Management

    FREE software to manage your psychology or allied health solo practice

    ...Look at the CleverPsych demonstration videos on Youtube and read the manual. The web site can also be accessed below. Mail me at cleverco@users.sourceforge.net (I am often away). Alternatively use the Discussion tab or post a ticket for problems. Error messages appear in the terminal window; you can mail a copy to me
    Downloads: 22 This Week
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  • 4
    DxTonia

    DxTonia

    A tool for detecting the presence of leg dystonia from videos.

    ...Note: Currently only works on Windows PC with Nvidia GPU. Soon, mac and Linux CPU only version will be released. The requirment files are in old-version_scripts folder. Instructions to use DxTonia https://www.rishabh-bajpai.com/dxtoniainstallation https://www.medrxiv.org/content/10.1101/2024.10.15.24315574
    Downloads: 2 This Week
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  • 5
    Healthy Weight Test

    Healthy Weight Test

    Test your healthy weight

    This program simply tells you whether you're at a healthy weight. It's available in Turkish and English. Please don't forget to star my app.
    Downloads: 0 This Week
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  • 6
    SimulaBeta

    SimulaBeta

    A simulation program for insulin-glucose homeostasis.

    SimulaBeta is a simulation program for insulin-glucose feedback control. It is based on a nonlinear MiMe-NoCoDI model.
    Downloads: 1 This Week
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  • 7
    SimThyr

    SimThyr

    A simulation program for thyroid homeostasis.

    SimThyr is a continuous simulation program for the human pituitary-thyroid feedback control system. Applications of this program cover research, including development of hypotheses, and education of students in biology and medicine, nurses and patients.
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    Downloads: 1 This Week
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  • 8
    Iris

    Iris

    2-photon scanning software

    ...It is supplied with auxiliary software for recording additional experimental parameters, such as behavioral states. Iris is freely available. You may modify it as you wish and use it as you wish, so long as you comply with the licence terms (see below). However, please note that we are **unable to offer any guarantee of support**. There are two exceptions to this. 1) If you find a bug (please start a ticket and report it). 2) If your support request intersects with our need to document the software. Iris is currently largely undocumented, but we will be adding documentation over time. ...
    Downloads: 0 This Week
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  • 9
    illness index

    illness index

    illness_index A Computer Program of a Medical Textbook.

    ...If a patient types presenting findings (such as headache, cough), the program prompts the user for expansion/denial of appropriate findings, in order to construct a list of patient findings. The program also calculates a list of likely diseases, which the user can use the web to find out more about. The program has more than 600 diseases and 1000 findings. Brought to you by Kit Free Software 2024 Ltd. Keywords - disease, health, healthcare, illnesses, illnessindex, illness_index.
    Downloads: 0 This Week
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  • 10

    Stanford Data Miner

    Tools for integration and analysis of heterogeneous immunological data

    ...The data exploration app is an open source business intelligence product called JasperServer (version 3.7), customized through supported configuration changes. Both apps use MySQL for back-end data persistence. Currently, the documentation contained herein is not intended to provide comprehensive instructions on installing and configuring the system. Please contact a project administrator for more information.
    Downloads: 0 This Week
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  • 11
    TRANSDICOM

    TRANSDICOM

    DICOM C-Find→C-Move→C-Store Free SoftWare

    This Program is a DICOM QR Tool. If you input a PatientID, you can find some Study. and you can send the other PACS. also you can get DICOM FIles(???.dcm).
    Downloads: 0 This Week
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  • 12

    biblioAssist

    python3 version of bibus

    python3 version of bibus https://sourceforge.net/projects/bibus-biblio/ It is nothing more than "it works on Debian testing (bookworm) AMD64. "
    Downloads: 3 This Week
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  • 13

    kSNP

    kSNP4 does SNP discovery and SNP annotation from whole genomes

    ...Finished and unfinished genomes can be analyzed together, and kSNP can automatically download Genbank files of the finished genomes and incorporate the information in those files into the SNP annotation. No programming skills are required to use kSNP4 Gardner, S.N. and Hall, B.G. 2013. . PLoS ONE, 8(12):e81760.doi:10.1371/journal.pone.0081760 Gardner, S.N., T. Slezak, and B.G. Hall. 2015 Bioinformatics 31: 2877-2878 doi: 10.1093/bioinformatics/btv271
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    Downloads: 13 This Week
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  • 14

    Res Medicinae

    Applications for use in Medicine

    Res Medicinae is the attempt to overcome high pricing in the realm of medical information systems and to provide users with a stable, platform independent, extensive system using latest technology and being open to many other medical systems.
    Downloads: 0 This Week
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  • 15
    Wings for NONMEM (wfn) is a set of DOS batch files and awk scripts to make the use of NONMEM more convenient. Simpler NONMEM execution: nmgo runname Extended control stream with user defined names for THETA(), etc. Automatic structured output ...
    Downloads: 0 This Week
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  • 16
    ECG Logger Viewer

    ECG Logger Viewer

    ECG Logger Viewer is the application software for ECG Logger device.

    ...The hardware has been made very simple and is based on an Arduino Nano micro-controller with two companion boards for the SD card mass-storage and the instrumentation differential amplifier. It can help monitoring arrhythmia syndromes such as bradycardia, tachycardia, extra-systoles or pause. WARNING: In no case it can be use to replace a professional medical examination. ************************************************************************************** see also : ECG Logger hardware : https://sourceforge.net/p/ecg-logger
    Downloads: 7 This Week
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  • 17
    ECG Logger

    ECG Logger

    ECG Logger is a complete Holter system incl. device and firmware.

    ...The hardware has been made very simple and is based on an Arduino Nano micro-controller with boards for SD card mass-storage, instrumentation differential amplifier and RTC. It can help monitoring arrhythmia syndromes such as bradycardia, tachycardia, extra-systoles, pause or flutter. WARNING: In no case it can be use to replace a professional medical examination. Device MUST NOT BE CONNECTED to appliance powered by mains - risk of electrical shocks ************************************************************************************** see also: ECG Logger Viewer application : https://sourceforge.net/projects/ecg-logger-viewer/
    Downloads: 0 This Week
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  • 18

    MAGeCK

    Model-based Analysis of Genome-wide CRISPR-Cas9 Knockout

    Model-based Analysis of Genome-wide CRISPR-Cas9 Knockout (MAGeCK) is a computational tool to identify important genes from the recent genome-scale CRISPR-Cas9 knockout screens technology. For instructions and documentations, please refer to the wiki page. MAGeCK is developed by Wei Li and Han Xu from Dr. Xiaole Shirley Liu's lab at Dana-Farber Cancer Institute/Harvard School of Public Health, and is maintained by Wei Li lab at Children's National Medical Center. We thank the support...
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    Downloads: 97 This Week
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  • 19
    18F-DOPA & 123I-FP-CIT templates

    18F-DOPA & 123I-FP-CIT templates

    18F-DOPA & 123I-FP-CIT (Ioflupane - DaTSCAN) human templates for SPM.

    ...García-Gómez & D. García-Solís. Contact: javier191185@gmail.com Terms of use These images are intended for free use by the neuroimaging community. However, we do ask that you please cite the following reference in any publications which make use of these images (previous version): [García-Gómez FJ, García-Solís D, Luis-Simón FJ, Marín-Oyaga VA, Carrillo F, Mir P, Vázquez-Albertino RJ. Elaboration of the SPM template for the standardization of SPECT images with 123I-Ioflupane. ...
    Downloads: 1 This Week
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  • 20
    Peptide Vaccine Analysis Tool (PVAT) is an optimization software that predicts the best possible peptide stretches in a given protein sequence based on two factors: 1. the surface exposure of the peptide stretches, and 2. their susceptibility to mutation.
    Downloads: 0 This Week
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  • 21
    DBSolveOptimum

    DBSolveOptimum

    The software for systems biology/pharmacology modeling

    ...By this time, DBSolveOptimum has been successfully tested and applied for the development and analysis of both systems pharmacology and conventional PK/PD models of drugs. It is free for academic and industrial use. http://www.ncbi.nlm.nih.gov/pubmed/20698988
    Downloads: 0 This Week
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  • 22

    ASR for Medical Reporting

    Automatic speech recognition system for medical reporting in spanish.

    This is a functional prototype of automatic speech recognition system for medical reporting in Spanish using CMU Sphinx4 ASR toolkit. This ASR use pre-trained acoustic model and context dependent language model in nuclear medicine diagnostics.
    Downloads: 0 This Week
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  • 23
    TIES

    TIES

    A smart search engine for medical documents

    TIES (Text Information Extraction System) is a clinical text search engine that uses Natural Language Processing techniques to extract medical concepts from free text clinical reports. It provides secure de-identified access to this information and has in built collaboration tools and honest broker functionality. It is licensed for academic use under the BSD license. For commercial use please contact Nexi at http://nexihub.com *** NOTICE: this software and forum are no longer maintained, as of 8/15/2019. You are free to continue to use this software under the license for academic use under the BSD license. For commercial use please contact Nexi at http://nexihub.com
    Downloads: 0 This Week
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  • 24
    SIVIC
    SIVIC is an open-source, standards-based software framework and application suite for processing and visualization of DICOM MR Spectroscopy data. Through the use of DICOM, SIVIC aims to facilitate the application of MRS in medical imaging studies.
    Downloads: 8 This Week
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  • 25
    DICOM Image Reader

    DICOM Image Reader

    A minimal Medical application to read and view DICOM (dcm) image file

    Dicom Image Reader is opensource medical image viewer built with JavaScript, HTML5, NodeJS and Electron framework. It can load data in DICOM format (single image dcm) and provides standard tools for its manipulation such as contrast, zoom, drag, possibility to draw regions on top of the image and imaging filters such as threshold and sharpening. It is based DWV JavaScript opensource library. =============== Requirements: - Processor: Intel Pentium 4 processor or later that's SSE2...
    Downloads: 9 This Week
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