Showing 30 open source projects for "use"

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  • 1

    BBMap

    BBMap short read aligner, and other bioinformatic tools.

    This package includes BBMap, a short read aligner, as well as various other bioinformatic tools. It is written in pure Java, can run on any platform, and has no dependencies other than Java being installed (compiled for Java 6 and higher). All tools are efficient and multithreaded. BBMap: Short read aligner for DNA and RNA-seq data. Capable of handling arbitrarily large genomes with millions of scaffolds. Handles Illumina, PacBio, 454, and other reads; very high sensitivity and...
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    Downloads: 1,266 This Week
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  • 2
    CleverPsych  Practice Management

    CleverPsych Practice Management

    FREE software to manage your psychology or allied health solo practice

    ...Look at the CleverPsych demonstration videos on Youtube and read the manual. The web site can also be accessed below. Mail me at cleverco@users.sourceforge.net (I am often away). Alternatively use the Discussion tab or post a ticket for problems. Error messages appear in the terminal window; you can mail a copy to me
    Downloads: 8 This Week
    Last Update:
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  • 3

    Stanford Data Miner

    Tools for integration and analysis of heterogeneous immunological data

    ...The data exploration app is an open source business intelligence product called JasperServer (version 3.7), customized through supported configuration changes. Both apps use MySQL for back-end data persistence. Currently, the documentation contained herein is not intended to provide comprehensive instructions on installing and configuring the system. Please contact a project administrator for more information.
    Downloads: 0 This Week
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  • 4

    ASR for Medical Reporting

    Automatic speech recognition system for medical reporting in spanish.

    This is a functional prototype of automatic speech recognition system for medical reporting in Spanish using CMU Sphinx4 ASR toolkit. This ASR use pre-trained acoustic model and context dependent language model in nuclear medicine diagnostics.
    Downloads: 0 This Week
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  • 5
    TIES

    TIES

    A smart search engine for medical documents

    TIES (Text Information Extraction System) is a clinical text search engine that uses Natural Language Processing techniques to extract medical concepts from free text clinical reports. It provides secure de-identified access to this information and has in built collaboration tools and honest broker functionality. It is licensed for academic use under the BSD license. For commercial use please contact Nexi at http://nexihub.com *** NOTICE: this software and forum are no longer maintained, as of 8/15/2019. You are free to continue to use this software under the license for academic use under the BSD license. For commercial use please contact Nexi at http://nexihub.com
    Downloads: 0 This Week
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  • 6

    yb Medical Dictionary User Customizable

    java8 based yb (creator's name) medical mini dictionary with text file

    As a medical blogger, I felt that there is a need for platform-independent medical dictionary. Hence 'java 8'. The dictionary must be customizable ie. user should be able to add, delete words. Hence, the use of text file for medical data, instead of xml or some database or sql or some hard-to-understand things. Java 8 can be invoked even from usb pen drives. We have used only one .java file which contains the main class. Compiling it yielded only two classes. Thus simplicity is maintained, without any frills. This medical mini dictionary has only some 10,00 sample words, available on internet freely. ...
    Downloads: 0 This Week
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  • 7
    CanReg5 (moved to Github)

    CanReg5 (moved to Github)

    Canreg5 is a software package for population based cancer registries

    ...If these data are also coded and verified in a standard way, it facilitates the production of comparable analyses across registry populations. The main goal of the CanReg5 project is to provide a flexible and easy to use tool to accomplish these objectives. CanReg5 is a multi user, multi platform, open source tool to input, store, check and analyse cancer registry data. It has modules to do: data entry, quality control, consistency checks and basic analysis of the data It was designed with an emphasis on user friendliness, it has a modern user interface and is easy to navigate. ...
    Downloads: 0 This Week
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  • 8

    Lab Storage

    Rediscover the Simplicity http://www.atgclabs.com/

    ...FWA can track all of your research, development and process scale-up data in a single data storage platform, providing a organized and time effective means of keeping inventory and tracking samples on a large scale, while integrating sample storage and data storage on one easy-to-use format, minimizing confusion and increasing overall efficiency. With FWA, storage of samples is simple and systematic by entering them into the program according to their physical arrangements we create virtual containers matching these configurations and dimensions.
    Downloads: 0 This Week
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  • 9
    HHS Digital Media API Platform

    HHS Digital Media API Platform

    Syndicate text and multimedia content with this API and storefront.

    Use this suite of Application Programming Interface (API) platforms to share web content across multiple channels. Mobile and tablet applications, widgets, and web pages may use the APIs to deliver and update content. The APIs allow content reuse and reduce development costs and product time-to-market. The APIs are available as .NET or Java instances.
    Downloads: 0 This Week
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  • 10

    CLEiM

    Cross Lingual Education in Medicine

    ...This system has been developed by the Intelligent System Group GSI (http://www.esi.uem.es/gsi/) at UEM University. We do NER (Named Entity Recognition) based on GATE platform. The installation is simple, you can use it as a Web application. It has been tested under apache-tomcat. The original system has been successfully used to carry out active learning activities with medical students. However, it could be interesting in much more knowledge fields.
    Downloads: 0 This Week
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  • 11
    This package contains code for use with Short Read DNA Sequencing technologies, and includes packages for ChIP-Seq, Whole Transcriptome Shotgun Sequencing, Whole Genome Shotgun Sequencing, SNP Detection, Transcript expression and file conversion.
    Downloads: 7 This Week
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  • 12
    On The Mark
    On The Mark is a video and image scoring system that allows one to mark any number of events and durations through a simple, easy-to-use graphical interface.
    Downloads: 136 This Week
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  • 13
    VetoSys

    VetoSys

    Veterinary management

    VetoSys is a management system that includes whole veterinary clinic management : animals, owners, account controls... You can use this tool to achieve its sales to the fund, its orders for products or veterinary services. A module for inventory are available.
    Downloads: 3 This Week
    Last Update:
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  • 14
    Neurology Diagnosis System
    “Neurology Diagnosis System” is a web-based expert system for diagnosis of neurologic disorders or the disorders of our nervous system. Health assistants in remote areas can use the system to diagnose neurologic patients in the absence of neurolo
    Downloads: 9 This Week
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  • 15
    Data curation tool to maintain variables for the National Survey of Health and Development managed by the Lifelong Health and Ageing Unit of the Medical Research Council.
    Downloads: 0 This Week
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  • 16

    clinicalStudyTracker

    Clinical study tracker tracks case study members through activities.

    Developed at Medical Research Council UK to meet a common clinical trial need to track various types of clinical data. Users log dates of completed tasks against participant ID. Simple, useable, reduces lost data! Makes graphical progress reports.
    Downloads: 0 This Week
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  • 17
    HELEN 3 Tools
    HELEN is a flexible framework to support the computer-based management of Clinical Practice Guidelines (CPG). It covers the whole life-cycle of a guideline, providing methods and tools for each step (from development to clinical use).
    Downloads: 0 This Week
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  • 18
    The goal of this project is to make an open electronic billing solution to be used by doctors in Manitoba. The software will satisfy the Manitoba Health requirement for electronic billing and provide doctors with an easy to use tool.
    Downloads: 0 This Week
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  • 19
    QSAR is a project that aims to build a GUI that enables people to build quantitative structure activity (or property) relationship models. It will use parts of CDK (cdk.sf.net), JOELib (joelib.sf.net), R (www.r-project.org) and other projects.
    Downloads: 0 This Week
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  • 20
    Avenzoar Digital Pathology Tool
    Avenzoar is a one-year exploration of renal cell carcinoma morphology and its related single nucleotide polymorphisms (SNPa) as a method of automating diagnosis of cancer by using a computer-aided decision tree controlled by analytical statistics.
    Downloads: 0 This Week
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  • 21
    Utility for tracking cycles of menstruation and for prediction of next period's date. Also you can use this to keep encrypted photos in nice gallery.
    Downloads: 3 This Week
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  • 22
    GRIP is a clinical decision support system for controlling glucose levels in critically ill patients. GRIP may replace paper-based protocols for intensive insulin therapy and can use arbitrary complex rules to advise nurses on insulin doses.
    Downloads: 0 This Week
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  • 23
    Frida is image analysis software. Frida was developed by the Johns Hopkins University Tissue Microarray Core Facility. It is open source and written in 100% Java. Frida makes use of functionality from the NIH's ImageJ application. Note: Frida was integr
    Downloads: 1 This Week
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  • 24
    Comprehensive Meta Prediction and Annotation Services for Proteins: The new all-in-one prediction tool that can be easily extended to include any SOAP/WSDL-enabled prediction servers. A concise user interface lets you use the results instantly.
    Downloads: 0 This Week
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  • 25
    Avian Freeware Suite (AFS) provides two things: Developers with libraries for Java Swing Widgets, XML handling, Fortran95 and Pascal; End users (Medical students, doctors, scientists) with productivity tools they can use (quizzes, XML databasing & PDF)
    Downloads: 0 This Week
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