Showing 167 open source projects for "mp.3"

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  • 1

    detectMITE

    Detection of Miniature Inverted Repeat Transposable Elements

    ... and Imperfect Inverted Repeats Using Complex Numbers and Vector Calculation. PLoS ONE 9(11): e113349. http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0113349 [3] detectMITE user manual Please visit the Wiki page of this website. [4] detectMITE Q&A For Q&A, please visit the Blog page of this website. [5] Update history To see the update history, go to https://sourceforge.net/p/detectmite/wiki/UpdateHistory/
    Downloads: 0 This Week
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  • 2
    MetaMIS

    MetaMIS

    Metagenomic Microbial Interaction Simulator

    ... an option to export consensus table. - Decimal time is allowed. 2016.12.16 MetaMIS_v1.01: - fix the memory-out problem for larger abundance table (>500 OTUs). - add three items to constrain the total number of running interaction networks 2016.11.17 MetaMIS_v1
    Downloads: 5 This Week
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  • 3
    A Matlab software routine to perform Principal Component Analysis using Covariance, Correlation or Comedian as the criterion. Though, initially developed for experiments related to fretting wear but can be effectively used to interpret experimental data from any field. The attached files contain source code as well as a sample MATLAB (.mat) data file of 13 variables. It could be replaced to the data file of your choice. The code is open source but you are requested to give credits if used....
    Downloads: 0 This Week
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  • 4
    AKtoolbox

    AKtoolbox

    Matlab Toolbox for coevolution analysis of multiple sequence alignment

    AK Toolbox is a Matlab Toolbox for co-evolution analysis for protein Multiple Sequence Alignment (MSA) distributed under Simplified BSD License. The aim of AK toolbox is to provide a set of Matlab functions, which are independent of Matlab Bioinforamtics Toolbox, for coevolution anaylsis for MSA. At present, co-evolution methods available in this package are Statistical Coupling Analysis (SCA), Explicit Likelihood of Subset Covariance (ELSC), Mutual Information (MI), Observed Minus...
    Downloads: 17 This Week
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  • 5
    SPINS
    GDS2HFSS is a circuit design utility to convert 2-dimensional layout file in GDS stream format into a 3-dimensional structure in electromagnetic (EM) simulator - ANSYS High Frequency Structure Simulator (HFSS).
    Downloads: 0 This Week
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  • 6
    F-Tracker3D

    F-Tracker3D

    A software tool for tracking fluorescent cells in 3D

    F-Tracker3D is acronym of "fluorescent cell tracker in three-dimensions". It is a software tool designed to track fluorescent cells using time-lapse z-stacks of images acquired with a confocal or light-sheet microscope. First, each single cell is tracked in 2D by using the maximum intensity projections of the z-stacks and CellTracker, the free open source software available at: www.celltracker.website. Then, the 3D track of each cell is obtained analysing the z-stacks and looking for the z...
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  • 7
    PALM

    PALM

    Probabilistic natural mapping for gene based association study.

    PALM is a software that conducts gene-based association analysis. PALM exploits Hidden Markov Models (HMM) to capture the inner genomic structures. Then, unique gene features (termed "palm prints") are extracted for each gene set by calculating the natural gradient. Then palm-prints are tested with chi-square significance test.
    Downloads: 0 This Week
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  • 8

    GPMfit

    Gaussian Process Model Fitting

    Gaussian Process model for fitting deterministic simulator output. Establish efficient and reliable likelihood optimization through hybridized DIRECT-BFGS and multi-start BFGS algorithms. Programming Language: Matlab.
    Downloads: 0 This Week
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  • 9

    lpACLib

    An Open-Source Library for Low-Power Approximate Computing Modules

    The “lpACLib” library contains the VHDL description of accurate and approximate versions of several arithmetic modules (like adders and multiplier of different bit-widths) and accelerators. Moreover, it also provides the corresponding software behavioral models/implementations developed in C and MATLAB to enable quality characterization. Besides our novel designs, it also contains implementations for several state-of-the-art arithmetic modules and their approximate versions. This open-source...
    Downloads: 6 This Week
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  • 10

    MetaOpen

    Metabolomics Bioinformatics Tools

    Our bioanalytical research exploits practical and efficient high-throughput technologies for the analyses of complex mixtures derived from living systems. This will facilitate the development of preventive, predictive and personalized medicine for specific diseases and will promote health and wellness. We use a number of high-throughput analytical platforms including multidimensional liquid chromatography-mass spectrometry (MDLC-MS) for proteomics, and for metabolomics; liquid...
    Downloads: 2 This Week
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  • 11
    SILA

    SILA

    Automated bacterial and archaeal genome annotation system

    SILA is a system for automated annotation of bacterial and archaeal genomes. It provides accurate gene prediction using a combination of tools (Prodigal and HGF) and a web site for task management and visualization of annotation. This project is in alpha stage. Please use the online service available at: http://www.bioinfo.ufpr.br/SILA/login.jsp Documentation (portuguese only): http://hdl.handle.net/1884/34801
    Downloads: 0 This Week
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  • 12

    Folder

    Toolbox for modelling deformation in layered media in 2D

    Folder is a tool to simulate and analyse the development of structures in mechanically layered media during layer parallel shortening or extension. It includes a graphical user interface that allows for easy designing of complex geometrical models, defining material parameters (including linear and non-linear rheology), and specifying type and amount of deformation. It also includes a range of features that facilitate the visualization and examination of various relevant quantities e.g....
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  • 13
    An Octave / LUA scripting language project dedicated to modeling electric motors inside the "Finite Element Method Magnetics" (FEMM) 2-D simulation program. Created to design a motor that fits inside a car wheel, experimenting in many degrees of freedo
    Downloads: 4 This Week
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  • 14
    Spatio-Kemporal kriging

    Spatio-Kemporal kriging

    Spatio-Kemporal forecast

    The Spatio-temporal Kriging is a small software for kriging. The main function of this software including: 1. This software have both Chinese and English speech interfaces; 2. Supports three kinds of time data format(day,month and year; 3. Analysis of basic statistics and normal distribution inspection; 4. Spatio-temporal Semi-variance Calculating; 5. Spatio-temporal model curvefitting of both separable and non-separable models; 6. Spatio-temporal interpolation of single time and many times...
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  • 15
    This site contains four packages of Mass and mass-based density estimation. 1. The first package is about the basic mass estimation (including one-dimensional mass estimation and Half-Space Tree based multi-dimensional mass estimation). This packages contains the necessary codes to run on MATLAB. 2. The second package includes source and object files of DEMass-DBSCAN to be used with the WEKA system. 3. The third package DEMassBayes includes the source and object files of a Bayesian...
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  • 16
    The Neurophysiological Biomarker Toolbox
    NBT is an open source Matlab toolbox for the computation and integration of neurophysiological biomarkers. NBT allows for easy implementation of new biomarkers, and incorporates an online wiki with extensive help and tutorials.
    Downloads: 0 This Week
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  • 17

    aslm

    aslm - a slightly modified asl-module

    aslm is an object orientated toolbox written in MATLAB. It was developed for common tasks associated with the analysis of arterial spin labeling (ASL) and other MRI data. Portions of the code rely heavily on (or are copied from) SPM (http://www.fil.ion.ucl.ac.uk/spm), marsbar (http://marsbar.sourceforge.net, Matthew Brett et al.), and GIFT (Group ICA of fMRI Toolbox v.1.3, http://mialab.mrn.org/software/gift/ )which are also released under the GNU public licence. The ASL subtraction-routine...
    Downloads: 2 This Week
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  • 18

    GDGC 2.0

    Geodetic-geocentric coordinate conversion program

    An application for geodetic-geocentric coordinate conversion problem
    Downloads: 0 This Week
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  • 19

    detectIR

    Detection of Perfect and Imperfect Inverted Repeats

    detectIR - a MATLAB-based tool for detecting perfect and imperfect inverted repeats in genomes. [1] Who are we? Please visit website: http://bioinfolab.miamioh.edu [2] How to cite detectIR? Ye C, Ji G, Li L, Liang C (2014) detectIR: A Novel Program for Detecting Perfect and Imperfect Inverted Repeats Using Complex Numbers and Vector Calculation. PLoS ONE 9(11): e113349. http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0113349 [3] detectIR user manual Please...
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  • 20
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  • 21

    ApproxAdderLib

    Library of Approximate Adders

    We provide MATLAB and Verilog Models of GeAr, and previously proposed adders (ACA-I, ETAII, ACA-II and GDA) at http://sourceforge.net/projects/approxadderlib/ GeAr is a low latency Generic Accuracy Configurable Adder that provides a higher number of potential configurations compared to state-of-the-art approximate adders, thus enabling a high degree of flexibility and trade-off between performance and output quality. These MATALB and Verilog models can allow software programmer as well as...
    Downloads: 1 This Week
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  • 22

    YASAV

    SRAM Memory Aging Simulator for Image/Video Processing Systems

    YASAV is a GUI-based tool for fast analysis and visualization of SRAM based memory aging. The customization is done for YUV videos to realize use cases for image/video processing applications. This tool accepts SRAM scratchpad memory configuration and user parameters (like test data sets, required aging years etc.) and provides aging estimates in terms of Static Noise Margin (the metric of SRAM aging estimation) and in-depth duty cycle analysis. This tool also supports automatic...
    Downloads: 0 This Week
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  • 23
    The major aim of the Psychtoolbox 3 wrapper is to provide a set of basic tools that allow programming novices the use of the Psychophysics Toolbox without limiting the power and flexibility of the Psychophysics Toolbox and MATLAB.
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  • 24

    Extended Marcatili Rectangular Waveguide

    Extended Marcatili method for Rectangular Waveguides in Matlab

    We recently extended Marcatili’s approximate analytical approach for the description of light propagation in rectangular waveguides to the regime of (silicon) high-index-contrast waveguides. This software is a Matlab implementation of the method.
    Downloads: 1 This Week
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  • 25
    psignifit is a toolbox to fit psychometric functions and test hypotheses on psychometric data. This is version 3 which will now predominantly support python.
    Downloads: 0 This Week
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