Search Results for "graph algorithm"
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Showing 62 open source projects for "graph algorithm"
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HugeGraph
A graph database that supports more than 100+ billion data
... Gremlin graph query language and RESTful API but also provides commonly used graph algorithm APIs. To help users easily implement various queries and analyses, HugeGraph has a full range of accessory tools, such as supporting distributed storage, data replication, scaling horizontally, and supports many built-in backends of storage engines. -
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amrlib
A python library that makes AMR parsing, generation and visualization
... in both the GUI and as library functions. Training and test code for both the StoG and GtoS models. A SpaCy extension that allows direct conversion of SpaCy Docs and Spans to AMR graphs. Sentence to Graph alignment routines FAA_Aligner (Fast_Align Algorithm), based on the ISI aligner code detailed in this paper. RBW_Aligner (Rule Based Word) for a simple, single token to single node alignment. -
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Vald
Vald. A Highly Scalable Distributed Vector Search Engine
Vald is a highly scalable distributed fast approximate nearest neighbor dense vector search engine. Vald is designed and implemented based on the Cloud-Native architecture. It uses the fastest ANN Algorithm NGT to search for neighbors. Vald has automatic vector indexing and index backup, and horizontal scaling which is made for searching from billions of feature vector data. Vald is easy to use, feature-rich and highly customizable as you needed. Usually, the graph requires locking during... -
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DynamicHMC
Implementation of robust dynamic Hamiltonian Monte Carlo methods
Implementation of robust dynamic Hamiltonian Monte Carlo methods in Julia. In contrast to frameworks that utilize a directed acyclic graph to build a posterior for a Bayesian model from small components, this package requires that you code a log-density function of the posterior in Julia. Derivatives can be provided manually, or using automatic differentiation. Consequently, this package requires that the user is comfortable with the basics of the theory of Bayesian inference, to the extent... -
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Metatheory.jl
General purpose algebraic metaprogramming
... of functional combinators for classical term rewriting and an e-graph rewriting, a fresh approach to term rewriting achieved through an equality saturation algorithm. Metatheory.jl can manipulate any kind of Julia symbolic expression type, as long as it satisfies the TermInterface.jl. -
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Go Recipes
Collection of handy tools for Go projects
Visualize the distribution of code coverage in your project. This helps to identify code areas with high and low coverage. Useful when you have a large project with lots of files and packages. This 2D image-hash of your project should be more representative than a single number. For each module, the node representing the greatest version (i.e., the version chosen by Go's minimal version selection algorithm) is colored green. Other nodes, which aren't in the final build list, are colored grey... -
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Hypercube
Graph visualizing tool
Hypercube is a tool for visualizing DOT (graphviz), GML, GraphML, GXL and simple text-based graph representations as SVG and EPS images. Hypercube comes with a Qt based GUI application and a Qt-independent command-line tool. It uses a simulated annealing algorithm to lay out the graph, that can be easily parameterized to achieve the desired look. The main development goals are portability and easy usage rather than high performance and complexity. -
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Jadecy
Java lib to compute (code) deps, SCCs, and cycles (Johnson algorithm).
Jadecy (Java Dependencies and Cycles) is a Java library to compute dependencies (elements depended on, or depending), strongly connected components, and cycles, in general directed graphs, or classes or packages dependencies graphs parsed from class files (major version <= 52, else does best effort). It uses Tarjan's algorithm for SCCs computation, and Johnson's algorithm for exhaustive cycles computation, with continuations instead of recursion, which allows to handle large graphs (< 2^31... -
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HipMer
A High performance distributed memory assembler for big genomic data
... and accuracy in metagenomic assemblies. It is able to reconstruct rRNA elements via a separate algorithm which relies on reference SSU and LSU Hidden Markov Models to help traverse the contig graph around ribosomal RNA regions. For more information and publications visit the HipMer Portal (http://portal.nersc.gov/project/hipmer/) MetaHipMer is one component of the ExaBiome project (https://sites.google.com/lbl.gov/exabiome/home), part of the Exascale Computing Project: https://www.exascaleproject.org/ -
BackBox seamlessly integrates with network monitoring and NetOps platforms and automates configuration backups, restores, and change detection. BackBox also provides before and after config diffs for change management, and automated remediation of discovered network security issues.
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gml4gtk
small console GML or graphviz DOT graph viewer
directed graph layout program for GML (Graph-Markup-Language) graph or partial graphviz DOT graph -
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BifurcumLib
A library for running through a directional graph.
This is the library for the project Bifurcum. It does all the work. It has a simple algorithm (Deep First Search with modifications) and allows sorting children before traversing. This library sums up the authors 4-years experience when programming a commercial tool for graph traversing (which used a much more advanced algorithm) and coaching its users. -
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Bifurcum
Software to run through a directional graph.
This software runs through a directional graph and writes the paths it found as test specifications. It has a simple algorithm (Deep First Search with modifications) and allows sorting children before traversing. This application sums up the authors 4-years experience when programming a commercial tool for graph traversing (which used a much more advanced algorithm) and coaching its users. Technically it is a front end for the library Bifurcumlib. -
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java-string-similarity
Implementation of various string similarity and distance algorithms
... below. The "cost" column gives an estimation of the computational cost to compute the similarity between two strings of length m and n respectively. If the alphabet is finite, it is possible to use the method of four russians (Arlazarov et al. "On economic construction of the transitive closure of a directed graph", 1970) to speedup computation. This was published by Masek in 1980 ("A Faster Algorithm Computing String Edit Distances"). -
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MetaPA is a de Bruijn graph algorithm to obtain complete protein coding genes by assembling metagenomic and metatranscriptomic short reads. Jiemeng Liu*, Qichao Lian*, Yamao Chen, Ji Qi. (2019) Amino acid based de Bruijn graph algorithm for identifying complete coding genes from metagenomic and metatranscriptomic short reads. Nucleic Acids Research.
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Easy Machine Learning
Easy Machine Learning is a general-purpose dataflow-based system
... platform Easy Machine Learning presents a general-purpose dataflow-based system for easing the process of applying machine learning algorithms to real-world tasks. In the system, a learning task is formulated as a directed acyclic graph (DAG) in which each node represents an operation (e.g. a machine learning algorithm), and each edge represents the flow of the data from one node to its descendants. -
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popt4jlib
Parallel Optimization Library for Java
popt4jlib is an open-source parallel optimization library for the Java programming language supporting both shared memory and distributed message passing models. Implements a number of meta-heuristic algorithms for Non-Linear Programming, including Genetic Algorithms, Differential Evolution, Evolutionary Algorithms, Simulated Annealing, Particle Swarm Optimization, Firefly Algorithm, Monte-Carlo Search, Local Search algorithms, Gradient-Descent-based algorithms, as well as some well-known... -
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PREESM provides a complete framework for fast prototyping. It generates a simulation and an optimized multiprocessor code from graph descriptions of algorithm and architecture. Please visit the project homepage at http://preesm.sourceforge.net.
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vizceral
WebGL visualization for displaying animated traffic graphs
vizceral is a component for displaying traffic data on a webgl canvas. If a graph of nodes and edges with data about traffic volume is provided, it will render a traffic graph animating the connection volume between nodes. This component can take multiple traffic graphs and will generate a 'global' graph showing all incoming traffic into each of the 'regions', with support for cross-region traffic. There are three levels of information, global, regional, and service-level, with clicking... -
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A spring-based 3D graph layout tool written in Java. Rendering is performed in OpenGL via the JOGL library.
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Satsuma .NET Graph Library
a delicious .NET graph library
Satsuma is a graph library for .NET, written in C#. Satsuma is an easy-to-use and flexible library, which implements all the necessary graph structures, and the fastest possible graph algorithms. DOCUMENTATION: http://satsumagraph.sourceforge.net/ Satsuma is not a charting library. 'Graph' is used in the mathematical sense here (e.g. nodes connected with arcs). Satsuma is released under the zlib license. This license is very permissive and allows you to use Satsuma for both personal... -
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ingap-cdg
codon-based de Bruijn graph algorithm for gene construction
Currently, most gene prediction methods detect coding sequences (CDSs) from transcriptome assembly when lacking of closely related reference genomes. However, these methods are of limited application due to highly fragmented transcripts and extensive assembly errors, which may lead to redundant or false CDS predictions. Here we present a novel algorithm, inGAP-CDG, for effective construction of full-length and non-redundant CDSs from unassembled transcriptomes. inGAP-CDG achieves... -
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The min cost is a program which is going to find the minimum cost or path of any given numbers. if you have a certain set of numbers this program is going to calculate the optimized cost for that set. Similarly, the program can perform Dijkstra's algorithm which is an algorithm for finding the shortest paths between nodes in a graph by simply insert the node distance in the input file and output the shortest path in output file. The program was written in C++ using a main algorithm of a heap...
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Graph isomorphism algorithm
Graph isomorphism algorithm in polynomial complexity
Graph isomorphism algorithm in polynomial complexity(O(n*n*n). it consume less than 1 second to judge Graph of 800 vertice in general. -
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Chemin Optimal
allow to Find the optimal path using FORD algorithm
Chemin optimal allows to draw nodes on a scene and link them with Arcs. You can affect values to each arc (the path's length). By clicking the launch button, chemin optimal show you the optimal path of the graphs using FORD algorithm. All operations are shown step by step. You can export the scene to a XML file. You can also load scene freom existing XML file. Chemin optimal check errors automatically before finding the minimal path. Chemin optimal is written in JAVA( JAVAFX ). -
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Algorithms & Data Structures in C++
Algorithms & Data structures in C++
An algorithm is represented by a .h file and placed under include. (one .header file per algorithm.) The demo program for the algorithm demonstration is placed under src. (one demo per algorithm.) After the program passes correctly, please initiate Pull Requests, the code is verified and stored in the library, and the new algorithm implementation is published in the README. TAB = 4 space. set ts=4 in vim. Graph output format is Graphviz Dot format. (the output format of the graph is in dot...