Search Results for "data analysis" - Page 58
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Showing 2195 open source projects for "data analysis"
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Seal
A toolkit for distributed processing of HT sequencing data.
Seal is a Hadoop-based distributed short read alignment and analysis toolkit. Currently Seal includes tools for: read demultiplexing, read alignment, duplicate read removal, sorting read mappings, and calculating statistics for empirical base quality recalibration. Seal scales, easily handling TB of data. -
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K-Surfer
A KNIME extension for the management and analysis of FreeSurfer Data
K-Surfer is a novel and unique software plugin for KNIME for the management and analysis of FreeSurfer brain dMRI data. K-Surfer consists of a suite of KNIME nodes that perform several tasks, such as importing diffusion data generated from TRACULA, importing morphological measures obtained from the segmentation and reconstruction of neuroimages and visualising the probability distribution of white matter pathways. -
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OpenI plugin for Pentaho CE provides a simple and clean user interface to visualize data in OLAP cubes. It supports both direct Mondrian and xmla based connections like Microsoft SQL Server Analysis Services (SSAS), plus provides add-on features like Explore Cube Data, custom SQL for drillthrough data, publishing drillthrough data to external web services etc.
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FoodPhysicsApplication
A C# application for scientists in the area of physical chemistry
The project has been created to develop a software that can help scientists in the area of physical chemistry with focus on foods data analysis tools that are currently mainly done by hand. In the first step, advanced analysis of texture analyzer compression data are provided and the project will be extended over time dependent on the time I can get to continue with it. -
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Pyphant is a framework for scientific data analysis. It features a flexible plugin architecture allowing for the application in many different fields. For the analysis a graph of processing steps is constructed, that can be applied via the cli as well.
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TrackArt
GUI for diffusion simulation and SMT data analysis
TrackArt is a simple MATLAB GUI for single particle tracking data analysis and simulation. -
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DDMsuite
Derivative Difference Minimization Program
DDM program is designed for crystal structure analysis from powder diffraction data by making use of either Rietveld or Derivative Difference Minimization (DDM) method. In the DDM method the refinement is aimed not at minimizing the absolute difference between the experimental and calculated profiles but at minimizing the oscillations (or curvature) of the difference curve. The squared values of the difference curve derivatives are used in DDM as a measure of the difference curvature. ... -
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The CM Engine translates digital images of rectangular plates that contain gridded colonies into quantitative data. It currently contains 3 analysis modes to ensure accurate measurements no matter how cells are deposited onto the agar.
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DSOL
DSOL: A Distributed Simulation Object Library implemented in Java
DSOL is a full featured multi-formalism, distributed simulation environment developed at Delft University of Technology (The Netherlands). DSOL has support for discrete event and for continuous modeling. Formalisms supported are event scheduling, DEVS, flow-based simulation, and continuous modeling through sets of differential equations. The first release was introduced at IEEE's Winter Simulation Conference in 2002. Since then, numerous papers and PhD dissertations have been developed, with... -
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ldi
Lucene Oracle Integration using Data Cartridge API
Lucene Domain Index is full integration of Lucene project running inside the Oracle database using Oracle JVM. The integration provides a transparent detection of row data changes and an SQL layer for doing search. -
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q pipeline manager
q: integrated platform for pipeline configuration and management
The q utility is a platform for creating and managing data analysis pipelines. It expands the value of your existing job scheduler - either Grid Engine or TORQUE PBS - through numerous functions that help you organize, submit, monitor, manage and share your informatics work. Data processing pipelines require high-level organization and parallelization of work to optimize resource utilization and decrease the time to results. q (from queue) allows complex job sequences to be efficiently assembled and managed, including dependency tracking, parallelization, and pipeline-level monitoring, error recovery, and data protection. ... -
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blastplot
A simple and easy to use perl package to plot blast output results
The development of Next Generation Sequencing (NGS) during the last decade has created an unprecedented amount of sequencing data, as well as the ability to rapidly sequence specimens of interest. Read-based BLAST analysis of NGS data is a common procedure especially in the case of metagenomic samples. However, coverage is usually not enough to allow for de novo assembly. This type of read-based analysis often creates the question of how a set of reads that align to the same sequence is distributed. ... -
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Framework for text mining, data integration and data analysis. Keywords: ontology and graph alignment, relation mining, warehouse, semantic database integration, bioinformatics, systems biology, microarray, Java.
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ActiveGEM contains a set of perl/Tk graphical interfaces for the GEMPAK meteorological diagnostics and plotting package. These research-oriented interfaces provide easy access to low-level GEMPAK functions and allow for the maximum possible flexibility.
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PythonStatsLab
A collection of useful statistical functions written in Python
...New functionality I wish to add are hypothesis testing and calculation of p-value, type I & II errors, etc. These functions would come in handy to anyone taking introductory or intermediate-level courses in probability, statistics and data analysis. There are several numerical integration techniques (Riemann sum, Simpson's method, Taylor expansion, etc.) that can be employed in this task, which I hope to add soon. Projected Future Improvements: -Estimation with 2 means -Student's t-distribution -Hart's algorithm for integrating CDF -
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BriPy
A BRIC-seq data analysis package written in Python.
-What is BRIC-seq? BRIC-seq, short for 5'-bromo-uridine (BrU) immunoprecipitation chase-deep sequencing analysis, is a novel method in Next Generation Sequencing (NGS) to determine the RNA stability of each transcript. It employs metabolic labeling by BrU of newly synthesized RNAs to chase chronological decreases of BrU-labeled RNA (Pulse-chase labeling), followed by immunoprecipitation with antibody for BrU, construction of cRNA library for High-throughput sequencing and computational data analysis. ... -
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QuantComponents
Free Java components for Quantitative Finance and Algorithmic Trading
An open-source framework for financial time-series analysis and algorithmic trading, based on Java and OSGi, with an Eclipse front-end. * Highly modular: usable as plain java API, OSGi components, or integrated into Eclipse * Standalone or client-server architecture, depending on performance and reliability needs * Integrated with Interactive Brokers through IB Java API * Generic broker API, it can easily be extended to work with other brokers * It works with historical and/or realtime market data * Backtesting facility * Extensible SWT charting library -
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Statcato is a Java software application for elementary statistics. Its features include data and graph generation, probability distributions, descriptive statistics, confidence intervals, hypothesis tests, correlation, regression, and analysis of var
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StringSolverGUI
Interactive Photovoltaic String optimizer
This program analyzes the possible ways of combining a set Photovoltaic Panels into a set of Pv strings and attempts to identify the optimal configuration, leading to the maximum achievable power output. -
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TOPS_CeMM
User Friendly Data Analysis Tool for Interaction Data
TOPS provides the benchtop scientist with a free toolset to analyze, filter and visualize data from functional genomic gene-gene and gene-drug interaction screens with a flexible interface to accommodate various different technologies and analysis algorithms in addition to those already provided here. -
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eRNA
A RNA data analysis tool
eRNA: A RNA data analysis tool for high-throughput RNA sequencing experiments -
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xBook
xBook is a framework for archaeological databases
xBook is a common framework for several archaeo-related database applications developed and published by Ludwig Maximilian University of Munich. All database applications that are based on the framework (called Books) provide the same basic technical features, but each application can be extended individually. Especially the Synchronisation and the User Rights Management are strong features that allow creating backups and sharing your data to collaborate with other users. The... -
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NISA
Image Stack Analyzer
OpenCV powered image stack analyser for data extraction and preparation. Can be used in conjunction with nanocalcFX. You can get sample data at the NISA homepage. Currently in pre-alpha state. -
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Scertify - TechDebt Community
Benchmark code quality and measure Technical Debt of projects in Sonar
Scertify™ Refactoring Assessment is an open source component dedicated to development & QA teams that provides exclusive benchmark data on Software Quality. It automatically detects the portions of an application that can be refactored, gives valuable information on refactoring strategies, and costs. Though IT departments have matured these last 10 years and have now no doubt on the benefits of a continuous control of code quality, three major concerns were still remaining, without any... -
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ABM-Calibration-SensitivityAnalysis
Codes and Data for Calibration and Sensitivity Analysis of ABM
Find here the model, code, and example results of parameter fitting/calibration and sensitivity analysis for an agent-based model using NetLogo and R. The corresponding manuscript is published in Journal of Artificial Societies and Social Simulation as: Thiele JC, Kurth W, Grimm V (2014): Facilitating parameter estimation and sensitivity analysis of agent-based models: a cookbook using NetLogo and R. <http://jasss.soc.surrey.ac.uk/xx/x/x.html> Methods/Techniques used are: a....